Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECA0113Putative membrane protein; Similar to Escherichia coli O6 hypothetical protein c1693 SWALL:AAN80160 (EMBL:AE016760) (204 aa) fasta scores: E(): 5.5e-40, 58.69% id in 184 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0404 SWALL:Q8XSR3 (EMBL:AL646078) (220 aa) fasta scores: E(): 9.5e-09, 31.25% id in 208 aa. (217 aa)    
Predicted Functional Partners:
ECA0114
Putative membrane protein; Similar to Escherichia coli O6 hypothetical protein c1694 SWALL:AAN80161 (EMBL:AE016760) (374 aa) fasta scores: E(): 9.6e-86, 56.09% id in 369 aa.
 
 0.961
ECA0111
Conserved hypothetical protein; Similar to Escherichia coli O6 putative GumP homolog c1691 SWALL:AAN80158 (EMBL:AE016760) (268 aa) fasta scores: E(): 3.6e-70, 63.43% id in 268 aa, and to Yersinia pestis hypothetical y2332 SWALL:AAM85891 (EMBL:AE013835) (283 aa) fasta scores: E(): 2.2e-69, 62.68% id in 268 aa, and to Xanthomonas axonopodis GumP protein SWALL:Q8PJG2 (EMBL:AE011897) (282 aa) fasta scores: E(): 8.9e-25, 35.71% id in 266 aa.
 
   
 0.949
ECA0112
Conserved hypothetical protein; Similar to Yersinia pestis putative coenzyme synthetase ypo1981 SWALL:Q8ZF14 (EMBL:AJ414150) (428 aa) fasta scores: E(): 3.7e-117, 67.37% id in 423 aa, and to Escherichia coli O6 hypothetical protein c1692 SWALL:AAN80159 (EMBL:AE016760) (428 aa) fasta scores: E(): 1.3e-111, 65.48% id in 423 aa.
 
     0.940
ECA0115
Putative fatty acid desaturase; Similar to Escherichia coli O6 hypothetical protein c1695 SWALL:AAN80162 (EMBL:AE016760) (363 aa) fasta scores: E(): 7.8e-66, 45.87% id in 364 aa, and to Synechocystis sp. linoleoyl-coA desaturase des6 or sll0262 SWALL:LLCD_SYNY3 (SWALL:Q08871) (359 aa) fasta scores: E(): 1.5e-18, 28.49% id in 365 aa.
 
  
 0.897
ECA0116
Putative fatty acid desaturase; Similar to Escherichia coli O6 hypothetical protein c1695 SWALL:AAN80162 (EMBL:AE016760) (363 aa) fasta scores: E(): 4.1e-77, 54.33% id in 346 aa, and to Synechocystis sp. linoleoyl-coA desaturase des6 or sll0262 SWALL:LLCD_SYNY3 (SWALL:Q08871) (359 aa) fasta scores: E(): 1.3e-20, 28.57% id in 364 aa.
 
  
 0.894
ECA0110
Similar to Yersinia pestis hypothetical protein SWALL:AAM85892 (EMBL:AL031866) (338 aa) fasta scores: E(): 1.2e-77, 59.64% id in 342 aa, and to Escherichia coli O6 hypothetical protein YbjS SWALL:AAN80157 (EMBL:AE016760) (338 aa) fasta scores: E(): 9.2e-76, 58.43% id in 332 aa, and to Yersinia pestis putative nucleotide di-p-sugar epimerase or dehydratase y2825 SWALL:AAM86376 (EMBL:AE013886) (341 aa) fasta scores: E(): 8.4e-58, 48.19% id in 332 aa.
 
 
 0.882
ECA0109
Similar to Escherichia coli O6 hypothetical protein c1689 SWALL:AAN80156 (EMBL:AE016760) (347 aa) fasta scores: E(): 6e-85, 68.73% id in 323 aa, and to Yersinia pestis hypothetical y2334 SWALL:AAM85893 (EMBL:AE013835) (179 aa) fasta scores: E(): 2.2e-47, 73.83% id in 172 aa.
 
     0.867
nuoC
NADH-quinone oxidoreductase chain C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 0.796
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 0.745
ispB
Octaprenyl-diphosphate synthase; Similar to Escherichia coli, and Shigella flexneri octaprenyl-diphosphate synthase IspB or Cel or b3187 or sf3227 SWALL:ISPB_ECOLI (SWALL:P19641) (323 aa) fasta scores: E(): 7.9e-100, 83.54% id in 322 aa; Belongs to the FPP/GGPP synthase family.
  
 0.709
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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