STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0126Similar to Escherichia coli O6 hypothetical protein c5295 SWALL:AAN83716 (EMBL:AE016771) (163 aa) fasta scores: E(): 3.3e-09, 43.82% id in 89 aa. (102 aa)    
Predicted Functional Partners:
ECA0127
Similar to Escherichia coli O6 hypothetical protein c5297 SWALL:AAN83718 (EMBL:AE016771) (203 aa) fasta scores: E(): 3.7e-34, 50.25% id in 199 aa, and to Erwinia amylovora hypothetical 47.8 kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta scores: E(): 8.3e-14, 27.5% id in 429 aa.
 
 
 0.961
ECA4153
Similar to Erwinia amylovora hypothetical 47.8 kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta scores: E(): 1.7e-30, 36.53% id in 364 aa, and to Caulobacter crescentus hypothetical protein Cc2770 SWALL:Q9A4R0 (EMBL:AE005942) (435 aa) fasta scores: E(): 2.8e-12, 31.42% id in 366 aa.
 
 
 0.732
ECA1061
Putative integrase; Similar to Escherichia coli O157:H7 hypothetical protein Z3942 SWALL:Q8X403 (EMBL:AE005493) (470 aa) fasta scores: E(): 1.1e-27, 33% id in 506 aa, and to Pasteurella multocida hypothetical protein Pm1947 SWALL:Q9CJP7 (EMBL:AE006231) (678 aa) fasta scores: E(): 2.3e-39, 26.83% id in 641 aa.
  
     0.646
ECA1059
Putative integrase; Similar to Escherichia coli O157:H7 putative site specific recombinase ecs3512 SWALL:Q8X3D8 (EMBL:AP002562) (401 aa) fasta scores: E(): 3.9e-44, 35.44% id in 395 aa, and to Staphylococcus aureus transposase a from transposon tn554 SWALL:TNPA_STAAM (SWALL:P06696) (361 aa) fasta scores: E(): 0.039, 23.1% id in 303 aa.
  
     0.592
mvpT
Putative plasmid protein; Similar to Shigella flexneri MvpT protein SWALL:CAC05863 (EMBL:AL391753) (75 aa) fasta scores: E(): 8e-18, 68.91% id in 74 aa, and to Salmonella dublin virulence-associated protein VagC SWALL:VAGC_SALDU (SWALL:Q05459) (76 aa) fasta scores: E(): 0.0048, 31.81% id in 66 aa.
  
     0.480
mvpA
Putative plasmid protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.431
ECA0366
Similar to Escherichia coli O6 hypothetical protein c3274 SWALL:AAN81723 (EMBL:AE016765) (103 aa) fasta scores: E(): 2.1e-22, 55.34% id in 103 aa.
  
     0.421
ECA0125
Similar to Anabaena sp. hypothetical protein Asr3468 asr3468 SWALL:Q8YRH9 (EMBL:AP003593) (83 aa) fasta scores: E(): 0.99, 34.28% id in 70 aa.
       0.405
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.