| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| rplC | rplJ | ECA4031 | ECA0221 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.998 |
| rplC | rplM | ECA4031 | ECA0306 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
| rplC | rplU | ECA4031 | ECA0690 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.995 |
| rplC | rpmA | ECA4031 | ECA0691 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L27; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein l27 RpmA SWALL:RL27_ECOLI (SWALL:P02427) (84 aa) fasta scores: E(): 1.7e-28, 89.28% id in 84 aa; Belongs to the bacterial ribosomal protein bL27 family. | 0.998 |
| rplC | rpmB | ECA4031 | ECA0146 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L28; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L28 RpmB or b3637 or c4461 or z5061 or ecs4512 or sf3676 SWALL:RL28_ECOLI (SWALL:P02428) (77 aa) fasta scores: E(): 3.3e-29, 93.5% id in 77 aa; Belongs to the bacterial ribosomal protein bL28 family. | 0.995 |
| rplC | rpmD | ECA4031 | ECA4013 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal subunit protein L30; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L30 RpmD or b3302 or c4063 or z4672 or ecs4167 or sf3334 SWALL:RL30_ECOLI (SWALL:P02430) (58 aa) fasta scores: E(): 8.9e-21, 94.82% id in 58 aa. | 0.998 |
| rplC | rpmG | ECA4031 | ECA0147 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L33; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L33 SWALL:RL33_ECOLI (SWALL:P02436) (54 aa) fasta scores: E(): 1.6e-19, 96.29% id in 54 aa; Belongs to the bacterial ribosomal protein bL33 family. | 0.994 |
| rplC | rpsN | ECA4031 | ECA4018 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.998 |
| rplC | rpsR | ECA4031 | ECA3611 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.997 |
| rplC | rpsT | ECA4031 | ECA3878 | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.973 |
| rplJ | rplC | ECA0221 | ECA4031 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 50S ribosomal subunit protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.998 |
| rplJ | rplM | ECA0221 | ECA0306 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 50S ribosomal subunit protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
| rplJ | rplU | ECA0221 | ECA0690 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.996 |
| rplJ | rpmA | ECA0221 | ECA0691 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 50S ribosomal subunit protein L27; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein l27 RpmA SWALL:RL27_ECOLI (SWALL:P02427) (84 aa) fasta scores: E(): 1.7e-28, 89.28% id in 84 aa; Belongs to the bacterial ribosomal protein bL27 family. | 0.994 |
| rplJ | rpmB | ECA0221 | ECA0146 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 50S ribosomal protein L28; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L28 RpmB or b3637 or c4461 or z5061 or ecs4512 or sf3676 SWALL:RL28_ECOLI (SWALL:P02428) (77 aa) fasta scores: E(): 3.3e-29, 93.5% id in 77 aa; Belongs to the bacterial ribosomal protein bL28 family. | 0.994 |
| rplJ | rpmD | ECA0221 | ECA4013 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 50S ribosomal subunit protein L30; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 50S ribosomal protein L30 RpmD or b3302 or c4063 or z4672 or ecs4167 or sf3334 SWALL:RL30_ECOLI (SWALL:P02430) (58 aa) fasta scores: E(): 8.9e-21, 94.82% id in 58 aa. | 0.998 |
| rplJ | rpmG | ECA0221 | ECA0147 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 50S ribosomal protein L33; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri 50S ribosomal protein L33 SWALL:RL33_ECOLI (SWALL:P02436) (54 aa) fasta scores: E(): 1.6e-19, 96.29% id in 54 aa; Belongs to the bacterial ribosomal protein bL33 family. | 0.994 |
| rplJ | rpsN | ECA0221 | ECA4018 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 30S ribosomal subunit protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.997 |
| rplJ | rpsR | ECA0221 | ECA3611 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. | 0.996 |
| rplJ | rpsT | ECA0221 | ECA3878 | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.979 |
