STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0152Similar to Paracoccidioides brasiliensis putative mannosyltransferase SWALL:Q96WZ3 (EMBL:AF374353) (357 aa) fasta scores: E(): 0.00027, 26.86% id in 201 aa, and to Pasteurella piscicida capsular polysaccharide SWALL:Q8VW69 (EMBL:AB074290) (315 aa) fasta scores: E(): 1, 22.46% id in 187 aa. (287 aa)    
Predicted Functional Partners:
kdtX
Similar to Serratia marcescens lipopolysaccharide core biosynthesis glycosyl transferase KdtX SWALL:KDTX_SERMA (SWALL:Q54435) (257 aa) fasta scores: E(): 3.5e-66, 65.72% id in 248 aa, and to Yersinia enterocolitica glucosyl-transferase WaaE SWALL:Q8RSW8 (EMBL:AY075041) (257 aa) fasta scores: E(): 3.5e-66, 65.72% id in 248 aa.
  
  
 0.719
kdtA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
     
 0.546
waaX
Similar to Edwardsiella tarda putative beta1,4-galactosyltransferase WaaX SWALL:AAL82722 (EMBL:AY078508) (251 aa) fasta scores: E(): 9.1e-32, 40.96% id in 249 aa, and to Escherichia coli putative beta1,4-galactosyltransferase WaaX SWALL:Q9ZIS2 (EMBL:AF019747) (257 aa) fasta scores: E(): 2.4e-09, 26.89% id in 264 aa.
       0.522
hmpX
Flavohemoprotein; Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress; Belongs to the globin family. Two-domain flavohemoproteins subfamily.
  
     0.424
ECA2134
Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu2014 or agr_c_3652 SWALL:Q8UDV5 (EMBL:AE009153) (327 aa) fasta scores: E(): 7.6e-08, 23.3% id in 266 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2377 SWALL:Q9I1A2 (EMBL:AE004664) (424 aa) fasta scores: E(): 8.8e-43, 39.38% id in 325 aa.
  
     0.404
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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