STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
waaXSimilar to Edwardsiella tarda putative beta1,4-galactosyltransferase WaaX SWALL:AAL82722 (EMBL:AY078508) (251 aa) fasta scores: E(): 9.1e-32, 40.96% id in 249 aa, and to Escherichia coli putative beta1,4-galactosyltransferase WaaX SWALL:Q9ZIS2 (EMBL:AF019747) (257 aa) fasta scores: E(): 2.4e-09, 26.89% id in 264 aa. (248 aa)    
Predicted Functional Partners:
ECA0611
Conserved hypothetical protein; Similar to Salmonella typhi putative DNA helicase sty4664 SWALL:Q8Z1C6 (EMBL:AL627283) (503 aa) fasta scores: E(): 1.4e-115, 59.24% id in 476 aa and to Proteus vulgaris helicase orf193 SWALL:Q8L286 (EMBL:AP004237) (491 aa) fasta scores: E(): 2.6e-64, 39.24% id in 474 aa.
 
     0.650
kdtX
Similar to Serratia marcescens lipopolysaccharide core biosynthesis glycosyl transferase KdtX SWALL:KDTX_SERMA (SWALL:Q54435) (257 aa) fasta scores: E(): 3.5e-66, 65.72% id in 248 aa, and to Yersinia enterocolitica glucosyl-transferase WaaE SWALL:Q8RSW8 (EMBL:AY075041) (257 aa) fasta scores: E(): 3.5e-66, 65.72% id in 248 aa.
  
  
 0.622
ECA0155
Hypothetical protein; Doubtful CDS. No significant database matches.
       0.570
ECA0152
Similar to Paracoccidioides brasiliensis putative mannosyltransferase SWALL:Q96WZ3 (EMBL:AF374353) (357 aa) fasta scores: E(): 0.00027, 26.86% id in 201 aa, and to Pasteurella piscicida capsular polysaccharide SWALL:Q8VW69 (EMBL:AB074290) (315 aa) fasta scores: E(): 1, 22.46% id in 187 aa.
       0.522
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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