STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0177Similar to Escherichia coli O6 hypothetical protein c3766 SWALL:AAN82210 (EMBL:AE016766) (245 aa) fasta scores: E(): 1.6e-60, 62.39% id in 234 aa. No other database matches. (238 aa)    
Predicted Functional Partners:
ECA0178
Putative membrane protein; Similar to Escherichia coli hypothetical protein YgiZ SWALL:YGIZ_ECOLI (SWALL:Q46867) (110 aa) fasta scores: E(): 4.5e-13, 38.88% id in 108 aa.
       0.773
ECA0176
Similar to Yersinia pestis hypothetical protein ypo2962 SWALL:Q8ZCM0 (EMBL:AJ414154) (161 aa) fasta scores: E(): 2e-36, 56.6% id in 159 aa, and to Escherichia coli O6 conserved hypothetical protein c3767 SWALL:AAN82211 (EMBL:AE016766) (159 aa) fasta scores: E(): 4.5e-35, 55.34% id in 159 aa.
       0.727
ECA0179
Similar to Yersinia pestis putative membrane protein ypo3790 SWALL:Q8ZAL1 (EMBL:AJ414159) (299 aa) fasta scores: E(): 2.1e-95, 75.08% id in 297 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical membrane protein YigM SWALL:YIGM_ECOLI (SWALL:P27849) (299 aa) fasta scores: E(): 2.9e-81, 65.31% id in 297 aa.
       0.427
fliD
Flagellar hook-associated protein 2; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.425
fliE
Flagellar hook-basal body complex protein; Similar to Escherichia coli, and Escherichia coli O157:H7 flagellar hook-basal body complex protein FliE or FlaN or Fla AI or b1937 or z3027 or ecs2676 SWALL:FLIE_ECOLI (SWALL:P25797) (103 aa) fasta scores: E(): 1.8e-20, 63.46% id in 104 aa.
  
  
 0.416
flgE
Flagellar hook protein; Similar to Salmonella typhimurium, and Salmonella typhi flagellar hook protein FlgE or FlaK or Fla FV or stm1177 or sty1216 SWALL:FLGE_SALTY (SWALL:P16322) (402 aa) fasta scores: E(): 9.2e-78, 58.43% id in 409 aa.
  
  
 0.400
fliM
Flagellar motor switch protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
    0.400
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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