STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0179Similar to Yersinia pestis putative membrane protein ypo3790 SWALL:Q8ZAL1 (EMBL:AJ414159) (299 aa) fasta scores: E(): 2.1e-95, 75.08% id in 297 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical membrane protein YigM SWALL:YIGM_ECOLI (SWALL:P27849) (299 aa) fasta scores: E(): 2.9e-81, 65.31% id in 297 aa. (299 aa)    
Predicted Functional Partners:
ECA3595
Putative membrane protein; Similar to Yersinia pestis putative exported protein ypo3523 or y0661 SWALL:Q8ZB96 (EMBL:AJ414157) (1305 aa) fasta scores: E(): 0, 65.19% id in 1313 aa, and to Salmonella typhi putative exported protein ytfn or sty4769 SWALL:Q8Z149 (EMBL:AL627283) (1259 aa) fasta scores: E(): 0, 57.79% id in 1315 aa.
  
     0.594
ECA3587
Putative membrane protein; Similar to Yersinia pestis putative exported protein ypo0651 or y3528 SWALL:Q8ZI63 (EMBL:AJ414144) (207 aa) fasta scores: E(): 2.5e-57, 76.69% id in 206 aa, and to Salmonella typhimurium, and Salmonella typhi putative sh3 domain protein ygim or stm3203 or sty3382 SWALL:Q8XFH7 (EMBL:AE008847) (204 aa) fasta scores: E(): 1.4e-51, 71.84% id in 206 aa.
  
   
 0.432
ECA0177
Similar to Escherichia coli O6 hypothetical protein c3766 SWALL:AAN82210 (EMBL:AE016766) (245 aa) fasta scores: E(): 1.6e-60, 62.39% id in 234 aa. No other database matches.
       0.427
ECA0178
Putative membrane protein; Similar to Escherichia coli hypothetical protein YgiZ SWALL:YGIZ_ECOLI (SWALL:Q46867) (110 aa) fasta scores: E(): 4.5e-13, 38.88% id in 108 aa.
       0.427
ECA0176
Similar to Yersinia pestis hypothetical protein ypo2962 SWALL:Q8ZCM0 (EMBL:AJ414154) (161 aa) fasta scores: E(): 2e-36, 56.6% id in 159 aa, and to Escherichia coli O6 conserved hypothetical protein c3767 SWALL:AAN82211 (EMBL:AE016766) (159 aa) fasta scores: E(): 4.5e-35, 55.34% id in 159 aa.
       0.406
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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