STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aapMSimilar to Rhizobium leguminosarum general L-amino acid transport system permease protein AapM SWALL:AAPM_RHILV (SWALL:Q52814) (384 aa) fasta scores: E(): 6.9e-63, 51.37% id in 364 aa, and to Escherichia coli hypothetical amino-acid ABC transporter permease protein yhdy or b3270 SWALL:YHDY_ECOLI (SWALL:P45768) (367 aa) fasta scores: E(): 1.4e-116, 81.37% id in 349 aa. (364 aa)    
Predicted Functional Partners:
aapP
Similar to Rhizobium leguminosarum general L-amino acid transport ATP-binding protein AapP SWALL:AAPP_RHILV (SWALL:Q52815) (257 aa) fasta scores: E(): 8.6e-70, 75.1% id in 245 aa, and to Escherichia coli hypothetical amino-acid ABC transporter ATP-binding protein yhdz yhdz or b3271 SWALL:YHDZ_ECOLI (SWALL:P45769) (252 aa) fasta scores: E(): 7.3e-81, 85.77% id in 253 aa.
 
 0.999
aapQ
Similar to Rhizobium leguminosarum general L-amino acid transport system permease protein AapQ SWALL:AAPQ_RHILV (SWALL:Q52813) (400 aa) fasta scores: E(): 9e-62, 48.04% id in 383 aa, and to Escherichia coli hypothetical amino-acid ABC transporter permease protein yhdx or b3269 SWALL:YHDX_ECOLI (SWALL:P45767) (362 aa) fasta scores: E(): 2.5e-106, 75.77% id in 355 aa.
 
0.999
aapJ
Similar to Rhizobium leguminosarum general L-amino acid-binding periplasmic protein AapJ precursor AapJ SWALL:AAPJ_RHILV (SWALL:Q52812) (341 aa) fasta scores: E(): 1.9e-78, 57.72% id in 343 aa, and to Escherichia coli putative amino-acid ABC transporter binding protein yhdw precursor yhdw or b3268 SWALL:YHDW_ECOLI (SWALL:P45766) (341 aa) fasta scores: E(): 6.6e-115, 84.45% id in 341 aa; Belongs to the bacterial solute-binding protein 3 family.
 
  0.999
ECA0246
Similar to Rhizobium meliloti putative amino-acid transport system permease ABC transporter protein r03276 SWALL:Q92L15 (EMBL:AL591793) (226 aa) fasta scores: E(): 4.3e-53, 68.8% id in 218 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical amino-acid ABC transporter permease protein YecS SWALL:AAN43512 (EMBL:AE000284) (222 aa) fasta scores: E(): 1.8e-34, 50% id in 218 aa.
 
 
 
0.951
ECA0247
Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 1.2e-23, 36.01% id in 261 aa, and to Lactobacillus fermentum basic surface protein SWALL:O06530 (EMBL:U97348) (264 aa) fasta scores: E(): 6.2e-28, 37.97% id in 266 aa; Belongs to the bacterial solute-binding protein 3 family.
  0.946
gltL
Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 4.5e-73, 87.55% id in 241 aa.
 
 0.812
ECA4478
Amino acid ABC transporter, ATP-binding protein; Similar to Escherichia coli, and Escherichia coli O157:H7 glutamate/aspartate transport ATP-binding protein GltL or b0652 or z0802 or ecs0691 SWALL:GLTL_ECOLI (SWALL:P41076) (241 aa) fasta scores: E(): 5.3e-49, 61.66% id in 240 aa.
 
 0.780
gltJ
Similar to Escherichia coli, and Escherichia coli O6 glutamate/aspartate transport system permease protein GltJ or b0654 or c0738 SWALL:GLTJ_ECOLI (SWALL:P41074) (246 aa) fasta scores: E(): 5.8e-85, 88.61% id in 246 aa.
 
 
 
0.760
glnQ
Similar to Escherichia coli glutamine transport ATP-binding protein GlnQ or b0809 SWALL:GLNQ_ECOLI (SWALL:P10346) (240 aa) fasta scores: E(): 6.2e-76, 90% id in 240 aa.
 
 0.731
occQ
Octopine transport system permease protein; Similar to Agrobacterium tumefaciens, and Agrobacterium tumefaciens octopine transport system permease protein OccQ SWALL:OCCQ_AGRTU (SWALL:P35119) (237 aa) fasta scores: E(): 3e-44, 51.94% id in 231 aa, and to Rhizobium meliloti octopine transport system permease protein OccQ SWALL:OCCQ_RHIME (SWALL:P72295) (237 aa) fasta scores: E(): 9.3e-43, 50.64% id in 233 aa.
  
 
  0.731
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.