Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA0250Similar to Pseudomonas syringae oxidoreductase, aldo/keto reductase family pspto3075 SWALL:Q880S6 (EMBL:AE016867) (350 aa) fasta scores: E(): 1.5e-90, 66.57% id in 350 aa, and to Xanthomonas axonopodis L-fucose dehydrogenase xac0158 SWALL:Q8PR11 (EMBL:AE011640) (349 aa) fasta scores: E(): 6.9e-73, 52.99% id in 351 aa. (352 aa)    
Predicted Functional Partners:
ECA2346
Similar to Salmonella typhi putative oxidoreductase sty1828 SWALL:Q8Z6F0 (EMBL:AL627271) (285 aa) fasta scores: E(): 1.1e-72, 63.7% id in 281 aa, and to Escherichia coli hypothetical protein yeae yeae or b1781 SWALL:YEAE_ECOLI (SWALL:P76234) (284 aa) fasta scores: E(): 4.1e-72, 63.7% id in 281 aa.
 
 0.701
scrK
Fructokinase; Similar to Escherichia coli fructokinase CscK SWALL:SCRK_ECOLI (SWALL:P40713) (307 aa) fasta scores: E(): 4.5e-67, 60.39% id in 303 aa, and to Erwinia amylovora fructokinase ScrK SWALL:Q9F4A1 (EMBL:AJ250722) (308 aa) fasta scores: E(): 1.6e-65, 60.06% id in 303 aa; Belongs to the carbohydrate kinase PfkB family.
    
 0.660
ECA1107
Similar to Escherichia coli hypothetical protein YajF or b0394 SWALL:YAJF_ECOLI (SWALL:P23917) (302 aa) fasta scores: E(): 5e-91, 75.74% id in 301 aa, and to Salmonella typhimurium putative sugar kinase/putative transcriptional regulator YajF or stm0393 SWALL:Q8ZRE5 (EMBL:AE008713) (302 aa) fasta scores: E(): 6.6e-91, 75.66% id in 300 aa.
     
  0.645
dkgA
Similar to Escherichia coli 2,5-diketo-D-gluconic acid reductase A DkgA or b3012 SWALL:DKGA_ECOLI (SWALL:Q46857) (275 aa) fasta scores: E(): 1e-80, 72.42% id in 272 aa. In Salmonella typhi this is a putative pseudogene but it is apparently intact here.
 
 0.555
ECA3293
Putative oxidoreductase; Similar to Rhizobium loti norsolorinic acid reductase mll1952 SWALL:Q98JG7 (EMBL:AP002998) (348 aa) fasta scores: E(): 1.6e-69, 55.58% id in 349 aa, and to Xanthomonas campestris rhizopine catabolism protein moca or xcc3724 SWALL:Q8P4I3 (EMBL:AE012493) (356 aa) fasta scores: E(): 6.5e-46, 45.37% id in 346 aa.
  
     0.544
ECA1962
Putative oxidoreductase; Similar to Listeria monocytogenes hypothetical protein Lmo0640 SWALL:Q8Y993 (EMBL:AL591976) (305 aa) fasta scores: E(): 4.4e-86, 74.42% id in 305 aa, and to Clostridium acetobutylicum aldo/keto reductase family enzyme cac3378 SWALL:Q97DU3 (EMBL:AE007834) (306 aa) fasta scores: E(): 7.6e-74, 62.86% id in 307 aa.
  
     0.498
ECA0249
Similar to Ralstonia solanacearum hypothetical protein rsc0616 or rs01517 SWALL:Q8Y1S3 (EMBL:AL646060) (156 aa) fasta scores: E(): 1.2e-33, 66.66% id in 135 aa, and to Xanthomonas axonopodis hypothetical protein Xac0357 SWALL:Q8PQG8 (EMBL:AE011661) (179 aa) fasta scores: E(): 1.2e-15, 42.24% id in 116 aa.
       0.436
ECA0251
endonuclease/Exonuclease/phosphatase family protein; No significant database matches.
     
 0.436
ECA0350
Similar to Yersinia pestis putative iron-containing alcohol dehydrogenase ypo0678 SWALL:Q8ZI38 (EMBL:AJ414144) (385 aa) fasta scores: E(): 3.8e-112, 76.94% id in 386 aa, and to Escherichia coli hypothetical oxidoreductase YqhD SWALL:YQHD_ECOLI (SWALL:Q46856) (387 aa) fasta scores: E(): 3e-108, 73.64% id in 387 aa.
  
 
 0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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