STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0251endonuclease/Exonuclease/phosphatase family protein; No significant database matches. (392 aa)    
Predicted Functional Partners:
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
    
  0.845
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
  0.753
ECA0252
Conserved hypothetical protein; Similar to Salmonella typhimurium putative cytoplasmic protein stm4186 SWALL:Q8ZKL3 (EMBL:AE008895) (135 aa) fasta scores: E(): 1.8e-24, 51.96% id in 127 aa, and to Escherichia coli O157:H7 hypothetical protein Z0414 SWALL:Q8X3L2 (EMBL:AE005211) (136 aa) fasta scores: E(): 7.2e-22, 48.43% id in 128 aa.
       0.574
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.533
ECA2359
Conserved hypothetical protein; Similar to Salmonella typhimurium putative cytoplasmic protein ycgb or stm1804 SWALL:Q8ZP16 (EMBL:AE008780) (510 aa) fasta scores: E(): 1.3e-185, 85.6% id in 507 aa, and to Escherichia coli hypothetical protein ycgb or b1188 SWALL:YCGB_ECOLI (SWALL:P29013) (510 aa) fasta scores: E(): 4.9e-185, 84.98% id in 506 aa.
   
    0.506
ECA0116
Putative fatty acid desaturase; Similar to Escherichia coli O6 hypothetical protein c1695 SWALL:AAN80162 (EMBL:AE016760) (363 aa) fasta scores: E(): 4.1e-77, 54.33% id in 346 aa, and to Synechocystis sp. linoleoyl-coA desaturase des6 or sll0262 SWALL:LLCD_SYNY3 (SWALL:Q08871) (359 aa) fasta scores: E(): 1.3e-20, 28.57% id in 364 aa.
  
     0.487
ECA0111
Conserved hypothetical protein; Similar to Escherichia coli O6 putative GumP homolog c1691 SWALL:AAN80158 (EMBL:AE016760) (268 aa) fasta scores: E(): 3.6e-70, 63.43% id in 268 aa, and to Yersinia pestis hypothetical y2332 SWALL:AAM85891 (EMBL:AE013835) (283 aa) fasta scores: E(): 2.2e-69, 62.68% id in 268 aa, and to Xanthomonas axonopodis GumP protein SWALL:Q8PJG2 (EMBL:AE011897) (282 aa) fasta scores: E(): 8.9e-25, 35.71% id in 266 aa.
  
     0.461
ECA0113
Putative membrane protein; Similar to Escherichia coli O6 hypothetical protein c1693 SWALL:AAN80160 (EMBL:AE016760) (204 aa) fasta scores: E(): 5.5e-40, 58.69% id in 184 aa, and to Ralstonia solanacearum probable transmembrane protein rsp0404 SWALL:Q8XSR3 (EMBL:AL646078) (220 aa) fasta scores: E(): 9.5e-09, 31.25% id in 208 aa.
  
     0.450
ECA0115
Putative fatty acid desaturase; Similar to Escherichia coli O6 hypothetical protein c1695 SWALL:AAN80162 (EMBL:AE016760) (363 aa) fasta scores: E(): 7.8e-66, 45.87% id in 364 aa, and to Synechocystis sp. linoleoyl-coA desaturase des6 or sll0262 SWALL:LLCD_SYNY3 (SWALL:Q08871) (359 aa) fasta scores: E(): 1.5e-18, 28.49% id in 365 aa.
  
     0.450
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
    
 0.441
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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