Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
aaeXPutative membrane protein; Similar to Serratia marcescens hypothetical 7.8 kDa protein yhcR SWALL:Q8RQS4 (EMBL:AB080601) (67 aa) fasta scores: E(): 3.5e-20, 80.64% id in 62 aa, and to Yersinia pestis putative membrane protein ypo3684 or y0179 SWALL:Q8ZAV0 (EMBL:AJ414158) (67 aa) fasta scores: E(): 5.7e-20, 76.56% id in 64 aa. (67 aa)    
Predicted Functional Partners:
aaeB
Putative membrane protein; Forms an efflux pump with AaeA. Could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell; Belongs to the aromatic acid exporter ArAE (TC 2.A.85) family.
 
  
 0.955
aaeA
Putative HlyD family secretion protein; Forms an efflux pump with AaeB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.906
mzrA
Putative exported protein; Modulates the activity of the EnvZ/OmpR two-component regulatory system, probably by directly modulating EnvZ enzymatic activity and increasing stability of phosphorylated OmpR.
  
   
 0.822
ompX
Outer membrane protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri outer membrane protein X precursor OmpX or b0814 or c0900 or z1036 or ecs0892 or sf0765 SWALL:OMPX_ECOLI (SWALL:P36546) (171 aa) fasta scores: E(): 9.1e-40, 66.47% id in 173 aa.
  
     0.774
tus
Similar to Escherichia coli DNA replication terminus site-binding protein Tus or Tau or b1610 SWALL:TUS_ECOLI (SWALL:P16525) (309 aa) fasta scores: E(): 1.9e-57, 49.34% id in 306 aa, and to Yersinia pestis DNA replication terminus site-binding protein Tus or ypo2265 or y2107 SWALL:TUS_YERPE (SWALL:Q9L6X9) (311 aa) fasta scores: E(): 4e-68, 57.79% id in 308 aa.
  
     0.772
ECA2305
Similar to Yersinia pestis putative membrane protein ypo2199 or y2042 SWALL:Q8ZEH4 (EMBL:AJ414151) (256 aa) fasta scores: E(): 8.8e-50, 55.42% id in 249 aa, and to Salmonella typhimurium putative inner membrane protein ycic or stm1734 SWALL:Q8ZP49 (EMBL:AE008777) (247 aa) fasta scores: E(): 9.6e-49, 55.82% id in 249 aa.
  
     0.772
ECA1166
Similar to Yersinia pestis hypothetical protein ypo3137 or y1047 SWALL:Q8ZC84 (EMBL:AJ414155) (122 aa) fasta scores: E(): 8.8e-36, 74.59% id in 122 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ybaj or b0461 or c0579 or z0574 or ecs0514 SWALL:YBAJ_ECOLI (SWALL:P37611) (124 aa) fasta scores: E(): 1.4e-26, 60.83% id in 120 aa.
  
     0.771
sseB
Enhanced serine sensitivity protein; Similar to Escherichia coli, and Shigella flexneri protein SseB or b2522 or sf2569 SWALL:SSEB_ECOLI (SWALL:P31143) (258 aa) fasta scores: E(): 1.6e-51, 55.11% id in 254 aa.
  
     0.770
ECA3661
Putative membrane protein; Similar to Yersinia pestis putative exported protein ypo0318 or y0575 SWALL:AAM84163 (EMBL:AJ414142) (72 aa) fasta scores: E(): 3.3e-15, 66.66% id in 69 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein yjbo or stm4244 or sty4440 SWALL:Q8XFK0 (EMBL:AE008898) (80 aa) fasta scores: E(): 9.7e-13, 53.84% id in 78 aa.
  
     0.769
ECA2472
Putative exported protein; Similar to Escherichia coli, and Shigella flexneri hypothetical protein yeby precursor yeby or b1839 or sf1850 SWALL:YEBY_ECOLI (SWALL:P76277) (113 aa) fasta scores: E(): 7.8e-23, 56.63% id in 113 aa, and to Yersinia pestis putative exported protein ypo1786 or y2521 SWALL:Q8ZFC8 (EMBL:AJ414150) (118 aa) fasta scores: E(): 1.1e-22, 57.14% id in 112 aa.
  
     0.767
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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