STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pmbAPutative modulator of DNA gyrase; Similar to Escherichia coli, and Escherichia coli O157:H7 PmbA protein PmbA or TldE or b4235 or z5845 or ecs5212 SWALL:PMBA_ECOLI (SWALL:P24231) (450 aa) fasta scores: E(): 3.2e-146, 84.3% id in 446 aa. (446 aa)    
Predicted Functional Partners:
tldD
Putative modulator of DNA gyrase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri TldD protein or b3244 or c3999 or sf3283 SWALL:TLDD_ECOLI (SWALL:P46473) (481 aa) fasta scores: E(): 9.6e-150, 82.53% id in 481 aa, and to Salmonella typhimurium, and Salmonella typhi suppresses inhibitory activity of csra tldd or stm3368 or sty3548 SWALL:Q8XFQ3 (EMBL:AE008855) (481 aa) fasta scores: E(): 5.5e-150, 82.74% id in 481 aa. Also similar to ECA1268 (55.297% id. in 472 aa overlap).
 
 
0.683
tldD-2
Putative suppressor of the inhibitory activity of the carbon storage regulator CsrA; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri TldD protein or b3244 or c3999 or sf3283 SWALL:TLDD_ECOLI (SWALL:P46473) (481 aa) fasta scores: E(): 6e-95, 54.66% id in 472 aa. Also similar to ECA0273 (55.297% id. in 472 aa overlap).
 
 
0.683
ECA0281
Similar to Yersinia pestis hypothetical protein Ypo3691 SWALL:Q8ZAU5 (EMBL:AJ414158) (182 aa) fasta scores: E(): 5.9e-48, 80.55% id in 180 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein Yjga SWALL:YJGA_ECOLI (SWALL:P26650) (183 aa) fasta scores: E(): 6.6e-46, 77.77% id in 180 aa; Belongs to the UPF0307 family.
  
    0.458
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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