STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0295ABC transporter, ATP-binding protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein YrbF SWALL:YRBF_ECOLI (SWALL:P45393) (269 aa) fasta scores: E(): 2.1e-73, 77.69% id in 269 aa, and to Yersinia pestis putative ABC transporter ATP-binding protein ypo3575 SWALL:AAM83740 (EMBL:AJ414157) (272 aa) fasta scores: E(): 7.8e-78, 85% id in 260 aa. (270 aa)    
Predicted Functional Partners:
ECA0296
Similar to Yersinia pestis putative membrane protein ypo3574 SWALL:Q8ZB51 (EMBL:AJ414157) (260 aa) fasta scores: E(): 1.8e-88, 88.84% id in 260 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YrbE SWALL:AAN44700 (EMBL:U18997) (260 aa) fasta scores: E(): 2.7e-84, 85.38% id in 260 aa.
 
 0.999
vpsC
Putative exported protein; Similar to Shigella flexneri VpsC SWALL:Q9RHA1 (EMBL:AF053073) (183 aa) fasta scores: E(): 5.2e-45, 68.64% id in 185 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yrbd precursor yrbd or b3193 or z4556 or ecs4072 SWALL:YRBD_ECOLI (SWALL:P45391) (183 aa) fasta scores: E(): 1.1e-45, 69.18% id in 185 aa. Shigella flexneri VpsC protein is involved in virulence protein secretion.
 
 0.998
ECA0298
Putative exported protein; Similar to Escherichia coli, and Shigella flexneri protein yrbc precursor yrbc or b3192 or sf3232 SWALL:AAN44698 (EMBL:U18997) (211 aa) fasta scores: E(): 1e-62, 76.77% id in 211 aa, and to Shigella flexneri YrbC SWALL:AAF21249 (EMBL:AF053073) (211 aa) fasta scores: E(): 1e-62, 76.77% id in 211 aa.
 
 
 0.977
ECA0299
Conserved hypothetical protein; Similar to Yersinia pestis putative anti-sigma B factor antagonist ypo3571 SWALL:Q8ZB54 (EMBL:AJ414157) (100 aa) fasta scores: E(): 3.9e-18, 60.41% id in 96 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yrbb yrbb or b3191 or sf3231 SWALL:YRBB_ECOLI (SWALL:P45389) (97 aa) fasta scores: E(): 4.6e-11, 40.62% id in 96 aa.
  
 0.973
ECA2463
Similar to Yersinia pestis hypothetical protein y1863 SWALL:AAM85430 (EMBL:AE013789) (885 aa) fasta scores: E(): 0, 70.97% id in 882 aa, and to Escherichia coli hypothetical protein yebt or b1834 SWALL:YEBT_ECOLI (SWALL:P76272) (877 aa) fasta scores: E(): 0, 68.98% id in 877 aa.
  
 
 0.796
ECA0300
Similar to Yersinia pestis bolA-like protein ypo3570 SWALL:AAM83735 (EMBL:AJ414157) (87 aa) fasta scores: E(): 9.3e-29, 88.09% id in 84 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri protein YrbA SWALL:YRBA_ECOLI (SWALL:P43781) (84 aa) fasta scores: E(): 2.9e-27, 84.52% id in 84 aa; Belongs to the BolA/IbaG family.
     
 0.554
nuoA
NADH-quinone oxidoreductase chain A; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.
   
    0.524
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.479
vacJ
Lipoprotein; Similar to Shigella flexneri VacJ lipoprotein precursor VacJ or sf2424 SWALL:VACJ_SHIFL (SWALL:P43262) (251 aa) fasta scores: E(): 1.2e-75, 71.71% id in 251 aa, and to Yersinia pestis vacj lipoprotein VacJ or ypo2743 SWALL:Q8ZD49 (EMBL:AJ414153) (254 aa) fasta scores: E(): 3.3e-80, 76.68% id in 253 aa.
 
   
 0.431
cysS
cysteinyl-RNA synthetase; Similar to Escherichia coli cysteinyl-tRNA synthetase CusS or b0526 SWALL:SYC_ECOLI (SWALL:P21888) (461 aa) fasta scores: E(): 2.5e-153, 83.94% id in 461 aa; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.413
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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