STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0299Conserved hypothetical protein; Similar to Yersinia pestis putative anti-sigma B factor antagonist ypo3571 SWALL:Q8ZB54 (EMBL:AJ414157) (100 aa) fasta scores: E(): 3.9e-18, 60.41% id in 96 aa, and to Escherichia coli, and Shigella flexneri hypothetical protein yrbb yrbb or b3191 or sf3231 SWALL:YRBB_ECOLI (SWALL:P45389) (97 aa) fasta scores: E(): 4.6e-11, 40.62% id in 96 aa. (96 aa)    
Predicted Functional Partners:
ECA0298
Putative exported protein; Similar to Escherichia coli, and Shigella flexneri protein yrbc precursor yrbc or b3192 or sf3232 SWALL:AAN44698 (EMBL:U18997) (211 aa) fasta scores: E(): 1e-62, 76.77% id in 211 aa, and to Shigella flexneri YrbC SWALL:AAF21249 (EMBL:AF053073) (211 aa) fasta scores: E(): 1e-62, 76.77% id in 211 aa.
 
 
 0.987
ECA0295
ABC transporter, ATP-binding protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical ABC transporter ATP-binding protein YrbF SWALL:YRBF_ECOLI (SWALL:P45393) (269 aa) fasta scores: E(): 2.1e-73, 77.69% id in 269 aa, and to Yersinia pestis putative ABC transporter ATP-binding protein ypo3575 SWALL:AAM83740 (EMBL:AJ414157) (272 aa) fasta scores: E(): 7.8e-78, 85% id in 260 aa.
  
 0.973
vpsC
Putative exported protein; Similar to Shigella flexneri VpsC SWALL:Q9RHA1 (EMBL:AF053073) (183 aa) fasta scores: E(): 5.2e-45, 68.64% id in 185 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yrbd precursor yrbd or b3193 or z4556 or ecs4072 SWALL:YRBD_ECOLI (SWALL:P45391) (183 aa) fasta scores: E(): 1.1e-45, 69.18% id in 185 aa. Shigella flexneri VpsC protein is involved in virulence protein secretion.
  
 0.970
ECA0296
Similar to Yersinia pestis putative membrane protein ypo3574 SWALL:Q8ZB51 (EMBL:AJ414157) (260 aa) fasta scores: E(): 1.8e-88, 88.84% id in 260 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YrbE SWALL:AAN44700 (EMBL:U18997) (260 aa) fasta scores: E(): 2.7e-84, 85.38% id in 260 aa.
  
 0.964
atpI
ATP synthase protein I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ATP synthase protein I AtpI or UncI or b3739 or c4667 or sf3819 SWALL:ATPZ_ECOLI (SWALL:P03808) (125 aa) fasta scores: E(): 5.7e-21, 57.02% id in 121 aa.
  
     0.774
ECA1145
Similar to Yersinia pestis putative lipoprotein ypo3161 or y1024 SWALL:AAM84605 (EMBL:AJ414155) (192 aa) fasta scores: E(): 7.8e-54, 80.2% id in 192 aa, and to Salmonella typhi putative lipoprotein sty0487 SWALL:Q8Z8V2 (EMBL:AL627266) (192 aa) fasta scores: E(): 2.3e-47, 68.75% id in 192 aa.
  
     0.765
ECA2883
Similar to Yersinia pestis hypothetical protein Ypo1864 SWALL:Q8ZF54 (EMBL:AJ414150) (74 aa) fasta scores: E(): 2.3e-16, 67.56% id in 74 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yecf or stm1949 or sty2157 SWALL:Q8XEK4 (EMBL:AE008786) (74 aa) fasta scores: E(): 7.4e-16, 62.16% id in 74 aa.
  
     0.765
cpxP
Putative stress resistance protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri periplasmic protein cpxp precursor CpxP or b3913/b3914 or c4865 or sf3992 SWALL:CPXP_ECOLI (SWALL:P32158) (166 aa) fasta scores: E(): 6.2e-20, 50% id in 140 aa.
  
     0.762
wecF
4-alpha-L-fucosyltransferase; Catalyzes the synthesis of Und-PP-GlcNAc-ManNAcA-Fuc4NAc (Lipid III), the third lipid-linked intermediate involved in ECA synthesis; Belongs to the glycosyltransferase 56 family.
  
     0.760
rffC
Lipopolysaccharide biosynthesis protein; Catalyzes the acetylation of dTDP-fucosamine (dTDP-4-amino- 4,6-dideoxy-D-galactose) to dTDP-Fuc4NAc, which is utilized in the biosynthesis of the enterobacterial common antigen (ECA). Belongs to the WecD family.
  
     0.757
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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