STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
budCAcetoin reductase; Similar to Klebsiella terrigena acetoin reductase BudC SWALL:BUDC_KLETE (SWALL:Q04520) (241 aa) fasta scores: E(): 1.3e-51, 69.06% id in 236 aa, and to Klebsiella pneumoniae acetoin reductase BudC SWALL:BUDC_KLEPN (SWALL:Q48436) (256 aa) fasta scores: E(): 1.8e-73, 82.28% id in 254 aa; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (257 aa)    
Predicted Functional Partners:
budA
Similar to Enterobacter aerogenes alpha-acetolactate decarboxylase aldC SWALL:ALDC_ENTAE (SWALL:P05361) (260 aa) fasta scores: E(): 6.2e-63, 59.76% id in 251 aa, and to Klebsiella terrigena alpha-acetolactate decarboxylase budA SWALL:ALDC_KLETE (SWALL:Q04518) (259 aa) fasta scores: E(): 1.1e-62, 58.26% id in 254 aa.
  
  
 0.960
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 
 0.704
nuoC
NADH-quinone oxidoreductase chain C/D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.704
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 
 0.655
budB
Similar to Klebsiella pneumoniae acetolactate synthase, catabolic budb or ilvK SWALL:ILVB_KLEPN (SWALL:P27696) (559 aa) fasta scores: E(): 6.5e-143, 66% id in 556 aa, and to Klebsiella terrigena acetolactate synthase, catabolic budB SWALL:ILVB_KLETE (SWALL:Q04524) (559 aa) fasta scores: E(): 4.5e-137, 64.15% id in 558 aa; Belongs to the TPP enzyme family.
  
 0.637
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
     
 0.619
budR
Similar to Klebsiella terrigena bud operon transcriptional regulator BudR SWALL:BUDR_KLETE (SWALL:P52666) (290 aa) fasta scores: E(): 1.3e-47, 48.44% id in 289 aa, and to Salmonella typhimurium putative transcriptional regulator StmR SWALL:Q9RQ20 (EMBL:AF134978) (292 aa) fasta scores: E(): 2.6e-35, 37.71% id in 289 aa; Belongs to the LysR transcriptional regulatory family.
      
 0.541
rffG
Similar to Escherichia coli dTDP-glucose 4,6-dehydratase RffG or b3788 SWALL:RFFG_ECOLI (SWALL:P27830) (355 aa) fasta scores: E(): 6.4e-119, 83% id in 353 aa; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.502
ECA2694
Putative polyketide synthetase; Similar to Amycolatopsis mediterranei peptide synthetase BpsD SWALL:Q939Y2 (EMBL:Y16952) (581 aa) fasta scores: E(): 2e-44, 32.34% id in 575 aa, and to Myxococcus xanthus Ta1 SWALL:Q9Z5F4 (EMBL:AJ006977) (2393 aa) fasta scores: E(): 4e-51, 32.97% id in 552 aa.
 
 
 0.479
waaJ
Similar to Escherichia coli lipopolysaccharide 1,2-glucosyltransferase RfaJ or WaaJ or b3626 SWALL:RFAJ_ECOLI (SWALL:P27129) (338 aa) fasta scores: E(): 4.4e-63, 49.69% id in 330 aa, and to Salmonella typhimurium lipopolysaccharide 1,2-glucosyltransferase RfaJ or WaaJ or stm3717 SWALL:RFAJ_SALTY (SWALL:P19817) (336 aa) fasta scores: E(): 5.6e-66, 53.98% id in 326 aa.
   
  
 0.474
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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