STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0327Similar to Yersinia pestis hypothetical protein ypo0659 SWALL:Q8ZI55 (EMBL:AJ414144) (260 aa) fasta scores: E(): 3.4e-92, 84.55% id in 259 aa, and to Escherichia coli hypothetical protein YgiD SWALL:YGID_ECOLI (SWALL:P24197) (271 aa) fasta scores: E(): 4.1e-81, 72.41% id in 261 aa. (261 aa)    
Predicted Functional Partners:
ECA4162
Similar to Yersinia pestis hypothetical protein ypo3956 or y3872 SWALL:Q8ZA62 (EMBL:AJ414160) (231 aa) fasta scores: E(): 2.2e-82, 82.25% id in 231 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yhhw or stm3544 or sty4267 SWALL:Q8XFI4 (EMBL:AE008863) (231 aa) fasta scores: E(): 4.1e-81, 80.95% id in 231 aa; Belongs to the pirin family.
 
  
 0.691
ECA0633
Similar to Salmonella typhi hypothetical protein sty3416 SWALL:Q8Z3K9 (EMBL:AL627278) (233 aa) fasta scores: E(): 1.4e-65, 68.67% id in 233 aa, and to Escherichia coli hypothetical protein YhaK SWALL:YHAK_ECOLI (SWALL:P42624) (233 aa) fasta scores: E(): 2.8e-63, 67.38% id in 233 aa; Belongs to the pirin family.
 
  
 0.564
ECA0325
Similar to Erwinia pyrifoliae putative plasmid stability protein StbD stbD SWALL:AAN04532 (EMBL:AY123045) (84 aa) fasta scores: E(): 8.7e-27, 88.09% id in 84 aa, and to Morganella morganii stability protein StbD SWALL:Q9ZH43 (EMBL:AF072126) (83 aa) fasta scores: E(): 9.5e-18, 63.95% id in 86 aaand to Escherichia coli IncF plasmid RepFIB replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 7.6e-10, 43.59% id in 78 aa.
       0.456
ECA0326
Similar to Erwinia pyrifoliae putative plasmid stability protein StbE SWALL:AAN04531 (EMBL:AY123045) (95 aa) fasta scores: E(): 1.7e-31, 90.32% id in 93 aa, and to Morganella morganii stability protein StbE SWALL:Q9ZH42 (EMBL:AF072126) (93 aa) fasta scores: E(): 1.3e-19, 62.06% id in 87 aa, and to Escherichia coli, and Shigella flexneri hypothetical RelE protein SWALL:RELE_ECOLI (SWALL:P07008) (95 aa) fasta scores: E(): 2.5e-15, 53.76% id in 93 aa.
       0.456
hpcH
Similar to Escherichia coli 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: E(): 4.9e-22, 32.4% id in 250 aa; Belongs to the HpcH/HpaI aldolase family.
  
  
 0.411
garL
2-dehydro-3-deoxyglucarate aldolase; Catalyzes the reversible retro-aldol cleavage of both 5-keto- 4-deoxy-D-glucarate and 2-keto-3-deoxy-D-glucarate to pyruvate and tartronic semialdehyde; Belongs to the HpcH/HpaI aldolase family. KDGluc aldolase subfamily.
  
  
 0.411
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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