STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0328Putative glutathionylspermidine synthase; Similar to Yersinia pestis hypothetical protein ypo0660 SWALL:Q8ZI54 (EMBL:AJ414144) (386 aa) fasta scores: E(): 1e-145, 87.27% id in 385 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YgiC SWALL:YGIC_ECOLI (SWALL:P24196) (386 aa) fasta scores: E(): 1.4e-133, 78.49% id in 386 aa. (386 aa)    
Predicted Functional Partners:
ECA0329
Similar to Yersinia pestis putative exported protein ypo0661 or y3517 SWALL:Q8ZI53 (EMBL:AJ414144) (228 aa) fasta scores: E(): 2.1e-59, 77.68% id in 233 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein ygib or stm3187 or sty3365 SWALL:Q8XGZ1 (EMBL:AE008846) (223 aa) fasta scores: E(): 3.8e-57, 74.56% id in 228 aa; Belongs to the UPF0441 family.
 
  
 0.963
ECA3620
Putative membrane protein; Similar to Salmonella typhimurium putative inner membrane protein yjfl or stm4374 SWALL:Q8ZK97 (EMBL:AE008905) (132 aa) fasta scores: E(): 2.3e-31, 63.63% id in 132 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yjfl yjfl or b4184 or z5791 or ecs5160 SWALL:YJFL_ECOLI (SWALL:P39294) (132 aa) fasta scores: E(): 6.8e-31, 61.36% id in 132 aa.
 
   0.742
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
    
 0.568
btuE
Putative vitamin B12 transport periplasmic protein; Non-specific peroxidase that can use thioredoxin or glutathione as a reducing agent.
     
 0.561
gor
Similar to Escherichia coli glutathione reductase Gor SWALL:GSHR_ECOLI (SWALL:P06715) (450 aa) fasta scores: E(): 3.8e-155, 86.66% id in 450 aa and to to Yersinia pestis glutathione reductase Gor SWALL:Q8ZA43 (EMBL:AJ414160) (450 aa) fasta scores: E(): 7.8e-158, 88.66% id in 450 aa.
     
 0.559
gst
Glutathione S-transferase; Similar to Escherichia coli, and Escherichia coli O157:H7 glutathione s-transferase Gst or b1635 or z2647 or ecs2344 SWALL:GT_ECOLI (SWALL:P39100) (201 aa) fasta scores: E(): 3.8e-39, 53.23% id in 201 aa; Belongs to the GST superfamily.
     
  0.540
chaC
Putative cation transport protein; Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides; Belongs to the gamma-glutamylcyclotransferase family.
     
  0.540
ECA2690
Similar to Yersinia pestis putative glutathione S-transferase-family protein ypo1314 SWALL:Q8ZGI3 (EMBL:AJ414147) (206 aa) fasta scores: E(): 1.4e-53, 62.62% id in 206 aa, and to Salmonella typhimurium putative glutathione S-transferase ylij or stm0862 SWALL:Q8ZQL2 (EMBL:AE008736) (208 aa) fasta scores: E(): 1.6e-47, 56.73% id in 208 aa.
     
  0.540
ECA2791
Putative glutathione S-transferase; Similar to Erwinia chrysanthemi hypothetical protein SWALL:Q8KKB6 (EMBL:AF503595) (205 aa) fasta scores: E(): 1.4e-53, 72.22% id in 180 aa, and to Agrobacterium tumefaciens glutathione S-transferase atu1394 or agr_c_2575 SWALL:Q8UFK3 (EMBL:AE009100) (254 aa) fasta scores: E(): 3.8e-56, 58.77% id in 228 aa.
     
  0.540
gshB
Similar to Escherichia coli glutathione synthetase GshB or Gsh-II or b2947 SWALL:GSHB_ECOLI (SWALL:P04425) (316 aa) fasta scores: E(): 2.1e-100, 81.2% id in 314 aa; Belongs to the prokaryotic GSH synthase family.
     
  0.540
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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