STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0328Putative glutathionylspermidine synthase; Similar to Yersinia pestis hypothetical protein ypo0660 SWALL:Q8ZI54 (EMBL:AJ414144) (386 aa) fasta scores: E(): 1e-145, 87.27% id in 385 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein YgiC SWALL:YGIC_ECOLI (SWALL:P24196) (386 aa) fasta scores: E(): 1.4e-133, 78.49% id in 386 aa. (386 aa)    
Predicted Functional Partners:
ECA0329
Similar to Yersinia pestis putative exported protein ypo0661 or y3517 SWALL:Q8ZI53 (EMBL:AJ414144) (228 aa) fasta scores: E(): 2.1e-59, 77.68% id in 233 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein ygib or stm3187 or sty3365 SWALL:Q8XGZ1 (EMBL:AE008846) (223 aa) fasta scores: E(): 3.8e-57, 74.56% id in 228 aa; Belongs to the UPF0441 family.
 
  
 0.959
ECA3620
Putative membrane protein; Similar to Salmonella typhimurium putative inner membrane protein yjfl or stm4374 SWALL:Q8ZK97 (EMBL:AE008905) (132 aa) fasta scores: E(): 2.3e-31, 63.63% id in 132 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yjfl yjfl or b4184 or z5791 or ecs5160 SWALL:YJFL_ECOLI (SWALL:P39294) (132 aa) fasta scores: E(): 6.8e-31, 61.36% id in 132 aa.
 
   0.722
ECA1156
Similar to Yersinia pestis putative pyridoxal-phosphate dependent protein ypo3147 or y1037 SWALL:Q8ZC75 (EMBL:AJ414155) (346 aa) fasta scores: E(): 1.4e-117, 83.47% id in 345 aa, and to Salmonella typhimurium putative cysteine synthase/cystathionine beta-synthase stm0458 SWALL:Q8ZRB5 (EMBL:AE008717) (351 aa) fasta scores: E(): 1.6e-105, 76.38% id in 343 aa.
  
     0.427
tolC
Similar to Escherichia coli outer membrane protein TolC precursor TolC or MtcB or MukA or RefI or b3035 SWALL:TOLC_ECOLI (SWALL:P02930) (495 aa) fasta scores: E(): 4.1e-124, 75.32% id in 466 aa, and to Erwinia chrysanthemi outer membrane protein TolC SWALL:Q93AG1 (EMBL:AF421372) (472 aa) fasta scores: E(): 2.3e-128, 77.89% id in 466 aa.
       0.410
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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