STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
plsCSimilar to Escherichia coli 1-acyl-sn-glycerol-3-phosphate acyltransferase PlsC or ParF or b3018 SWALL:PLSC_ECOLI (SWALL:P26647) (245 aa) fasta scores: E(): 2e-77, 75.41% id in 244 aa. (245 aa)    
Predicted Functional Partners:
plsB
Glycerol-3-phosphate acyltransferase; Similar to Escherichia coli, and Escherichia coli O6 glycerol-3-phosphate acyltransferase PlsB or b4041 or c5011 SWALL:PLSB_ECOLI (SWALL:P00482) (806 aa) fasta scores: E(): 0, 77.08% id in 803 aa; Belongs to the GPAT/DAPAT family.
 
 
 0.967
plsY
Putative membrane protein; Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.
  
 
 0.928
cdsA
Phosphatidate cytidylyltransferase; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri phosphatidate cytidylyltransferase cdsa or cds or b0175 or z0186 or ecs0177 or sf0165 SWALL:CDSA_ECOLI (SWALL:P06466) (249 aa) fasta scores: E(): 2.5e-74, 74.08% id in 247 aa; Belongs to the CDS family.
    
 0.922
dgkA
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid.
    
 0.906
cdh
Similar to Escherichia coli CDP-diacylglycerol pyrophosphatase Cdh or b3918 SWALL:CDH_ECOLI (SWALL:P06282) (251 aa) fasta scores: E(): 7.1e-40, 43.65% id in 252 aa.
     
  0.900
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri glycerol-3-phosphate dehydrogenase [NAD(P)+] GpsA or b3608 or c4430 or z5035 or ecs4486 or sf3647 SWALL:GPDA_ECOLI (SWALL:P37606) (339 aa) fasta scores: E(): 9.3e-104, 86.26% id in 335 aa; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.825
glpD
Similar to Escherichia coli aerobic glycerol-3-phosphate dehydrogenase GlpD or GlyD or b3426 SWALL:GLPD_ECOLI (SWALL:P13035) (501 aa) fasta scores: E(): 9e-157, 76.59% id in 500 aa; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.821
glpA
Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri anaerobic glycerol-3-phosphate dehydrogenase subunit A GlpA or b2241 or z3499 or ecs3126 or sf2323 SWALL:GLPA_ECOLI (SWALL:P13032) (542 aa) fasta scores: E(): 1.1e-153, 72.34% id in 546 aa; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.821
glpC
Similar to Escherichia coli, and Escherichia coli O157:H7 anaerobic glycerol-3-phosphate dehydrogenase subunit C GlpC or b2243 or z3501 or ecs3128 SWALL:GLPC_ECOLI (SWALL:P13034) (396 aa) fasta scores: E(): 2.2e-126, 76.82% id in 397 aa.
     
  0.800
glpB
Anaerobic glycerol-3-phosphate dehydrogenase subunit B; Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor.
     
  0.800
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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