STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0348GntR-family transcriptional regulator; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical transcriptional regulator YegW SWALL:YEGW_ECOLI (SWALL:P76420) (248 aa) fasta scores: E(): 3.2e-22, 30.8% id in 237 aa. (245 aa)    
Predicted Functional Partners:
ECA2841
Similar to Pseudomonas putida transcriptional regulator, GntR family pp2066 SWALL:AAN67680 (EMBL:AE016781) (254 aa) fasta scores: E(): 1.5e-32, 40.83% id in 240 aa, and to Streptomyces coelicolor putative GntR-family transcriptional regulator sco5231 or sc7e4.28C SWALL:Q9K492 (EMBL:AL939123) (254 aa) fasta scores: E(): 8.3e-10, 31.53% id in 241 aa.
  
   
 0.766
ECA0190
Similar to Bacillus halodurans transcriptional regulator bh3917 SWALL:Q9K616 (EMBL:AP001520) (261 aa) fasta scores: E(): 6.3e-11, 26.81% id in 220 aa, and to Escherichia coli fatty acyl responsive regulator FarR SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 1.8e-09, 26.81% id in 220 aa.
  
     0.712
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
   
  
 0.644
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
    
  0.640
nagA
N-acetylglucosamine-6-phosphate deacetylase; Similar to Escherichia coli, and Escherichia coli O157:H7 N-acetylglucosamine-6-phosphate deacetylase NagA or b0677 or z0824 or ecs0707 SWALL:NAGA_ECOLI (SWALL:P15300) (382 aa) fasta scores: E(): 1.7e-109, 72.55% id in 379 aa.
 
  
 0.602
ECA4051
Putative transcriptional regulator; Similar to Xanthomonas campestris hypothetical protein Xcc0062 SWALL:Q8PEB9 (EMBL:AE012100) (116 aa) fasta scores: E(): 3.8e-29, 75.47% id in 106 aa, and to Rhizobium loti hypothetical protein Mll3985 SWALL:Q98F15 (EMBL:AP003003) (137 aa) fasta scores: E(): 3.7e-28, 76.47% id in 102 aa.
   
  
 0.539
ECA2456
Probable transcriptional regulator (partial); Partial CDS. Similar to the C-terminal regions of many including Pseudomonas aeruginosa probable transcriptional regulator pa2488 SWALL:Q9I0Z4 (EMBL:AE004676) (254 aa) fasta scores: E(): 0.0017, 50% id in 42 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20956 SWALL:AAO07868 (EMBL:AE016811) (259 aa) fasta scores: E(): 0.0035, 48.78% id in 41 aa.
  
  
 0.487
pspC
Phage shock protein C; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri phage shock protein C PspC or b1306 or c1777 or z2479 or ecs1883 or sf1311 SWALL:PSPC_ECOLI (SWALL:P23855) (119 aa) fasta scores: E(): 1.5e-25, 63.15% id in 114 aa.
      
 0.430
gcvP
Putative glycine cleavage system P protein (glycine dehydrogenase [decarboxylating]); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
  0.428
frdA
Similar to Escherichia coli fumarate reductase flavoprotein subunit FrdA or b4154 SWALL:FRDA_ECOLI (SWALL:P00363) (601 aa) fasta scores: E(): 4.9e-203, 84.52% id in 601 aa.
  
  
 0.424
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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