STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0352Similar to Yersinia pestis AraC-family regulatory protein ypo0679 SWALL:AAM87046 (EMBL:AJ414144) (297 aa) fasta scores: E(): 3.2e-77, 66.21% id in 296 aa, and to Escherichia coli hypothetical transcriptional regulator YqhC SWALL:YQHC_ECOLI (SWALL:Q46855) (318 aa) fasta scores: E(): 1.2e-66, 57.77% id in 296 aa. (321 aa)    
Predicted Functional Partners:
ECA1545
Similar to Neisseria meningitidis putative AraC-family transcriptional regulator nma0578 SWALL:Q9JW23 (EMBL:AL162753) (318 aa) fasta scores: E(): 2.2e-06, 26.26% id in 316 aa, and to Pseudomonas stutzeri putative transcriptional activator pdtorfC SWALL:Q9L8R1 (EMBL:AF196567) (235 aa) fasta scores: E(): 2e-15, 35.65% id in 230 aa.
  
     0.604
ECA0775
AraC-family transcriptional regulator; Similar to Pseudomonas aeruginosa ChpD SWALL:O87004 (EMBL:U79580) (264 aa) fasta scores: E(): 8.8e-26, 38.49% id in 239 aa, and to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 6.6e-15, 32.51% id in 243 aa. Note that there are no significant database matches to enterobacterial species.
  
     0.598
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
 0.574
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.571
rhaS
L-rhamnose operon regulatory protein; Activates expression of the rhaBAD and rhaT operons.
  
     0.547
ECA1518
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 1.1e-30, 40.21% id in 281 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 4.3e-30, 35.44% id in 268 aa.
  
     0.535
ECA0350
Similar to Yersinia pestis putative iron-containing alcohol dehydrogenase ypo0678 SWALL:Q8ZI38 (EMBL:AJ414144) (385 aa) fasta scores: E(): 3.8e-112, 76.94% id in 386 aa, and to Escherichia coli hypothetical oxidoreductase YqhD SWALL:YQHD_ECOLI (SWALL:Q46856) (387 aa) fasta scores: E(): 3e-108, 73.64% id in 387 aa.
     
 0.499
ECA0615
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2430 SWALL:AAN68042 (EMBL:AE016783) (276 aa) fasta scores: E(): 1.1e-67, 56.72% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 2.1e-63, 53.65% id in 274 aa.
  
     0.480
ECA3837
AraC-family transcriptional regulator; Similar to Vibrio vulnificus AraC-type DNA-binding domain-containing protein vv20572 SWALL:AAO07518 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.1e-52, 48.36% id in 275 aa, and to Vibrio cholerae transcriptional regulator, AraC/XylS family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 3.6e-50, 50% id in 270 aa.
  
     0.475
dkgA
Similar to Escherichia coli 2,5-diketo-D-gluconic acid reductase A DkgA or b3012 SWALL:DKGA_ECOLI (SWALL:Q46857) (275 aa) fasta scores: E(): 1e-80, 72.42% id in 272 aa. In Salmonella typhi this is a putative pseudogene but it is apparently intact here.
 
   
 0.461
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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