Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ECA0356Putative membrane protein; Similar to Yersinia pestis putative C4-dicarboxylate transporter, small subunit ypo1578 SWALL:Q8ZFV0 (EMBL:AJ414149) (168 aa) fasta scores: E(): 5.2e-51, 70.83% id in 168 aa. (168 aa)    
Predicted Functional Partners:
ECA0355
Putative DedA-family membrane protein; Similar to Yersinia pestis putative c4-dicarboxylate transporter, large subunit ypo1577 SWALL:AAM86142 (EMBL:AJ414149) (430 aa) fasta scores: E(): 2.6e-146, 92.09% id in 430 aa.
 
 0.993
ECA0357
Substrate-binding periplasmic protein; Similar to Rhodobacter capsulatus C4-dicarboxylate-binding periplasmic protein precursor DctP SWALL:DCTP_RHOCA (SWALL:P37735) (333 aa) fasta scores: E(): 2.3e-25, 31.3% id in 329 aa, and to Yersinia pestis putative C4-dicarboxylate transporter, periplasmic protein ypo1579 SWALL:Q8ZFU9 (EMBL:AJ414149) (330 aa) fasta scores: E(): 5.7e-94, 75.45% id in 330 aa.
 
  
 0.956
ECA4314
Putative exported protein; Similar to Yersinia pestis hypothetical y3253 SWALL:Q8CKN3 (EMBL:AE013927) (255 aa) fasta scores: E(): 2.6e-44, 48.56% id in 243 aa.
  
     0.423
ECA4381
Putative DNA-binding protein; Similar to Shigella flexneri yjjm gene product yjjm or sf4388 SWALL:AAN45804 (EMBL:AE015445) (304 aa) fasta scores: E(): 2.8e-109, 88.81% id in 304 aa, and to Escherichia coli hypothetical protein yjjm or b4357 SWALL:YJJM_ECOLI (SWALL:P39399) (268 aa) fasta scores: E(): 6.2e-95, 88.06% id in 268 aa.
 
     0.400
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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