STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
ECA0357Substrate-binding periplasmic protein; Similar to Rhodobacter capsulatus C4-dicarboxylate-binding periplasmic protein precursor DctP SWALL:DCTP_RHOCA (SWALL:P37735) (333 aa) fasta scores: E(): 2.3e-25, 31.3% id in 329 aa, and to Yersinia pestis putative C4-dicarboxylate transporter, periplasmic protein ypo1579 SWALL:Q8ZFU9 (EMBL:AJ414149) (330 aa) fasta scores: E(): 5.7e-94, 75.45% id in 330 aa. (325 aa)    
Predicted Functional Partners:
ECA0355
Putative DedA-family membrane protein; Similar to Yersinia pestis putative c4-dicarboxylate transporter, large subunit ypo1577 SWALL:AAM86142 (EMBL:AJ414149) (430 aa) fasta scores: E(): 2.6e-146, 92.09% id in 430 aa.
 
 
 0.958
ECA0356
Putative membrane protein; Similar to Yersinia pestis putative C4-dicarboxylate transporter, small subunit ypo1578 SWALL:Q8ZFV0 (EMBL:AJ414149) (168 aa) fasta scores: E(): 5.2e-51, 70.83% id in 168 aa.
 
  
 0.956
dcuS
Two-component sensor kinase; Similar to Escherichia coli, and Escherichia coli O157:H7 sensor protein DcuS or b4125 or z5727 or ecs5107 SWALL:DCUS_ECOLI (SWALL:P39272) (543 aa) fasta scores: E(): 4.2e-114, 56.84% id in 533 aa.
    
 0.408
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
   
 0.401
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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