STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0366Similar to Escherichia coli O6 hypothetical protein c3274 SWALL:AAN81723 (EMBL:AE016765) (103 aa) fasta scores: E(): 2.1e-22, 55.34% id in 103 aa. (103 aa)    
Predicted Functional Partners:
ECA0367
Putative DNA-binding protein; Similar to Escherichia coli O6 hypothetical protein YgjM c3273 SWALL:AAN81722 (EMBL:AE016765) (139 aa) fasta scores: E(): 1.1e-21, 50% id in 134 aa.
 
 
 0.993
ECA3160
Similar to Salmonella typhimurium putative transcriptional regulator stm2195 SWALL:Q8ZNL4 (EMBL:AE008798) (129 aa) fasta scores: E(): 3.8e-14, 38.68% id in 137 aa, and to Salmonella typhi putative DNA-binding protein sty2429 SWALL:Q8Z5A0 (EMBL:AL627273) (129 aa) fasta scores: E(): 4.4e-14, 38.68% id in 137 aa.
  
     0.647
mvpA
Putative plasmid protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.627
mvpT
Putative plasmid protein; Similar to Shigella flexneri MvpT protein SWALL:CAC05863 (EMBL:AL391753) (75 aa) fasta scores: E(): 8e-18, 68.91% id in 74 aa, and to Salmonella dublin virulence-associated protein VagC SWALL:VAGC_SALDU (SWALL:Q05459) (76 aa) fasta scores: E(): 0.0048, 31.81% id in 66 aa.
  
     0.617
mcK
Putative plasmid-related protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.613
ECA2988
Conserved hypothetical protein (partial); Similar to the C-terminal region of many including Salmonella typhimurium putative inner membrane protein stm4518 SWALL:Q8ZJZ4 (EMBL:AE008912) (171 aa) fasta scores: E(): 0.0011, 36.61% id in 71 aa, and to Escherichia coli, and Salmonella typhimurium ydga protein ydga or ygdB SWALL:Q9Z4C7 (EMBL:AB021078) (313 aa) fasta scores: E(): 6.5e-07, 49.25% id in 67 aa, and to Photorhabdus luminescens putative truncated transposase SWALL:Q937N5 (EMBL:AF346497) (79 aa) fasta scores: E(): 0.069, 36% id in 75 aa.
  
     0.526
ECA0958
Similar to Salmonella typhi hypothetical protein Sty4517 SWALL:Q8Z1M5 (EMBL:AL627282) (97 aa) fasta scores: E(): 3.4e-31, 89.69% id in 97 aa, and to Xanthomonas campestris hypothetical protein Xcc3104 SWALL:Q8P668 (EMBL:AE012426) (96 aa) fasta scores: E(): 2.5e-23, 72.63% id in 95 aa.
  
     0.500
rfbX
Similar to Salmonella typhi putative O-antigen transporter RfbX or sty2297 SWALL:RFBX_SALTI (SWALL:Q99191) (432 aa) fasta scores: E(): 2.3e-41, 33.25% id in 418 aa, and to Yersinia pseudotuberculosis putative O-antigen export protein RfbX SWALL:RFBX_YERPS (SWALL:Q05347) (437 aa) fasta scores: E(): 3.6e-33, 35.66% id in 429 aa.
  
     0.486
ECA0127
Similar to Escherichia coli O6 hypothetical protein c5297 SWALL:AAN83718 (EMBL:AE016771) (203 aa) fasta scores: E(): 3.7e-34, 50.25% id in 199 aa, and to Erwinia amylovora hypothetical 47.8 kDa protein SWALL:Q9F814 (EMBL:AF264948) (427 aa) fasta scores: E(): 8.3e-14, 27.5% id in 429 aa.
  
   
 0.483
ECA0365
Conserved hypothetical protein; Similar to Yersinia pestis putative membrane protein ypo4112 SWALL:AAM87668 (EMBL:AJ414160) (223 aa) fasta scores: E(): 2e-10, 30% id in 190 aa, and to Proteus mirabilis CcM1 protein SWALL:O86433 (EMBL:AJ000084) (228 aa) fasta scores: E(): 1.1e-08, 32.06% id in 131 aa.
       0.468
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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