STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0383Similar to Yersinia pestis hypothetical protein ypo3447 SWALL:AAM84326 (EMBL:AJ414157) (152 aa) fasta scores: E(): 6.9e-49, 83.89% id in 149 aa, and to Escherichia coli, and Shigella flexneri protein Yjgk SWALL:YJGK_ECOLI (SWALL:P39335) (150 aa) fasta scores: E(): 1.1e-39, 70.47% id in 149 aa. (155 aa)    
Predicted Functional Partners:
ECA4152
Putative two-component system sensor kinase; Similar to Yersinia pestis putative membrane protein ypo3943 or y3885 SWALL:Q8ZA74 (EMBL:AJ414159) (565 aa) fasta scores: E(): 5.9e-173, 82.11% id in 559 aa, and to Shigella flexneri 2a str. 2457T putative 2-component sensor protein yehu or s2325 SWALL:AAP17542 (EMBL:AE016985) (561 aa) fasta scores: E(): 8e-149, 68.84% id in 552 aa.
  
     0.453
lacZ
Beta-galactosidase; Similar to Escherichia coli beta-galactosidase LacZ or b0344 SWALL:BGAL_ECOLI (SWALL:P00722) (1023 aa) fasta scores: E(): 0, 64.84% id in 1024 aa; Belongs to the glycosyl hydrolase 2 family.
   
 
 0.432
ECA3353
Putative two-component system response regulator; Similar to Yersinia pestis hypothetical response regulatory protein ypo3287/y0902 ypo3287 or y0902 SWALL:Q8ZBV2 (EMBL:AJ414156) (238 aa) fasta scores: E(): 1.1e-70, 77.31% id in 238 aa, and to Salmonella typhimurium hypothetical response regulatory protein yeht yeht or stm2158 SWALL:Q8ZNN2 (EMBL:AE008796) (239 aa) fasta scores: E(): 1e-51, 55% id in 240 aa.
  
     0.409
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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