STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0387Similar to Yersinia pestis putative membrane protein ypo0399 SWALL:Q8ZIT9 (EMBL:AJ414142) (398 aa) fasta scores: E(): 2.2e-94, 59.04% id in 398 aa. (393 aa)    
Predicted Functional Partners:
ECA0388
Putative peptidase; Similar to Yersinia pestis m48 peptidase family protein ypo0398 SWALL:AAM87329 (EMBL:AJ414142) (348 aa) fasta scores: E(): 4.5e-79, 59.88% id in 344 aa.
 
     0.933
ECA0845
Putative membrane protein; Similar to Xylella fastidiosa hypothetical protein xf0268 SWALL:Q9PGN0 (EMBL:AE003880) (395 aa) fasta scores: E(): 2.5e-82, 61.69% id in 355 aa, and to Salmonella typhi putative membrane protein sty4872 SWALL:Q8Z0X3 (EMBL:AL627284) (394 aa) fasta scores: E(): 3.4e-79, 62.78% id in 352 aa, and to Escherichia coli hypothetical protein YjiJ SWALL:YJIJ_ECOLI (SWALL:P39381) (392 aa) fasta scores: E(): 3.8e-75, 58.23% id in 352 aa.
  
     0.472
ECA1674
Similar to Pyrococcus furiosus hypothetical protein Pf0664 SWALL:Q8U312 (EMBL:AE010187) (102 aa) fasta scores: E(): 2.1e-05, 31.81% id in 88 aa.
  
     0.410
traF
Putative plasmid transfer protein; Similar to Shigella sonnei TraF protein SWALL:Q9Z4A1 (EMBL:AB021078) (400 aa) fasta scores: E(): 2.9e-81, 55% id in 400 aa, and to Salmonella typhimurium TraF protein SWALL:Q9R2H5 (EMBL:AB027308) (400 aa) fasta scores: E(): 3.4e-81, 54.75% id in 400 aa, and to Escherichia fergusonii TraF SWALL:Q8KR61 (EMBL:AY046057) (401 aa) fasta scores: E(): 1e-61, 44.52% id in 402 aa.
  
     0.406
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.