STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0388Putative peptidase; Similar to Yersinia pestis m48 peptidase family protein ypo0398 SWALL:AAM87329 (EMBL:AJ414142) (348 aa) fasta scores: E(): 4.5e-79, 59.88% id in 344 aa. (345 aa)    
Predicted Functional Partners:
ECA0387
Similar to Yersinia pestis putative membrane protein ypo0399 SWALL:Q8ZIT9 (EMBL:AJ414142) (398 aa) fasta scores: E(): 2.2e-94, 59.04% id in 398 aa.
 
     0.933
bepA
Putative exported protein; Functions as both a chaperone and a metalloprotease. Maintains the integrity of the outer membrane by promoting either the assembly or the elimination of outer membrane proteins, depending on their folding state.
  
     0.503
ECA3915
Putative peptidase; Similar to Salmonella typhimurium, and Salmonella typhi putative zn-dependent proteases with possible chaperone function yggg or stm3077 or sty3237 SWALL:Q8XGA5 (EMBL:AE008841) (252 aa) fasta scores: E(): 2.5e-63, 71.88% id in 249 aa, and to Yersinia pestis putative lipoprotein ypo0927 SWALL:Q8ZHH0 (EMBL:AJ414145) (250 aa) fasta scores: E(): 1.3e-67, 76.4% id in 250 aa.
  
   
 0.502
bspA
Putative mechanosensitive ion channel; Similar to Erwinia chrysanthemi BspA protein precursor BspA SWALL:Q9EV03 (EMBL:AJ251781) (1106 aa) fasta scores: E(): 0, 77.97% id in 1108 aa, and to Yersinia pestis putative membrane transport protein ypo0363 or y0619 SWALL:AAM84207 (EMBL:AJ414142) (1119 aa) fasta scores: E(): 0, 71.54% id in 1114 aa.
   
 
 0.423
ECA1485
Putative lipoprotein; Similar to Fusobacterium nucleatum hypothetical cytosolic protein Fn1347 SWALL:Q8RDZ4 (EMBL:AE010639) (218 aa) fasta scores: E(): 2.7e-21, 31.77% id in 214 aa, and to Rhizobium meliloti hypothetical protein ra0291 or sma0558 SWALL:Q930A7 (EMBL:AE007221) (170 aa) fasta scores: E(): 6.4e-06, 34.94% id in 83 aa.
  
     0.403
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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