STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0399Hypothetical protein; Similar to Shigella flexneri orf, partial conserved hypothetical protein sf0591 SWALL:AAN42233 (EMBL:AE015090) (95 aa) fasta scores: E(): 6.2e-05, 44.44% id in 54 aa. No other significant database matches. (73 aa)    
Predicted Functional Partners:
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
    
 0.757
ECA0399A
Similar to Yersinia pestis putative hemagglutinin-like secreted protein y1701 SWALL:AAM85269 (EMBL:AE013774) (681 aa) fasta scores: E(): 1.7e-06, 68.29% id in 41 aa, and to Escherichia coli O6 hypothetical protein c1207 SWALL:AAN79669 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.3e-06, 64.28% id in 42 aa.
    
  0.567
ECA0400
Putative phage-related protein; Similar to Human herpesvirus 4 capsid protein vp26 bfrf3 SWALL:CAD53401 (EMBL:AJ507799) (176 aa) fasta scores: E(): 5.7, 33.73% id in 83 aa, and to Epstein-barr virus capsid protein vp26 bfrf3 SWALL:VP26_EBV (SWALL:P14348) (176 aa) fasta scores: E(): 5.7, 33.73% id in 83 aa; No significant database matches.
       0.564
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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