STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0409Putative plasmid-related protein; Similar to Escherichia coli O157:H7 plasmid po157 DNA, complete sequence l7011 SWALL:O82928 (EMBL:AB011549) (91 aa) fasta scores: E(): 9.3e-12, 42.85% id in 91 aa, and to Shigella sonnei YacB protein yacB SWALL:Q9Z4G4 (EMBL:AB021078) (93 aa) fasta scores: E(): 0.63, 30% id in 90 aa. (91 aa)    
Predicted Functional Partners:
ECA0408
Putative plasmid-related protein; Similar to Pseudomonas resinovorans hypothetical protein SWALL:BAC41561 (EMBL:AB088420) (133 aa) fasta scores: E(): 5.7e-08, 41.97% id in 81 aa, and to Escherichia coli O157:H7 plasmid po157 DNA, complete sequence l7010 SWALL:O82927 (EMBL:AB011549) (94 aa) fasta scores: E(): 1.7e-06, 38.66% id in 75 aa.
 
 
 0.979
ECA2757
Similar to Agrobacterium tumefaciens hypothetical protein atu1783 or agr_c_3279 SWALL:Q8UEH4 (EMBL:AE009134) (122 aa) fasta scores: E(): 4e-09, 46.83% id in 79 aa, and to Rhizobium loti hypothetical protein Msr2423 SWALL:Q98IF7 (EMBL:AP002999) (81 aa) fasta scores: E(): 1.1e-08, 45.2% id in 73 aa.
  
 
 0.631
ECA0410
Putative kinase; Similar to Corynebacterium glutamicum shikimate kinase Arok or cgl1622 SWALL:AROK_CORGL (SWALL:Q9X5D1) (169 aa) fasta scores: E(): 0.12, 26.62% id in 169 aa, and to Xanthomonas campestris hypothetical protein Xcc0737 SWALL:Q8PCI9 (EMBL:AE012173) (148 aa) fasta scores: E(): 2e-19, 52.38% id in 126 aa.
       0.620
putA
Bifunctional PutA protein [includes: proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
 
 0.597
ECA1467
Conserved hypothetical protein; Similar to Enterobacter aerogenes KluA kluA SWALL:Q93KC6 (EMBL:U67194) (89 aa) fasta scores: E(): 6e-17, 60.92% id in 87 aa, and to Pseudomonas sp. hypothetical 10.2 kDa protein orf2 SWALL:Q937D1 (EMBL:U66917) (93 aa) fasta scores: E(): 6.3e-17, 60.92% id in 87 aa.
  
 
 0.581
ECA3633
Similar to Salmonella typhi hypothetical protein Sty3093 SWALL:Q8Z448 (EMBL:AL627276) (118 aa) fasta scores: E(): 4.3e-20, 75.94% id in 79 aa, and to Vibrio cholerae hypothetical protein Vca0360.1 SWALL:YV6A_VIBCH (SWALL:P58093) (80 aa) fasta scores: E(): 1.5e-05, 42.85% id in 77 aa.
  
 
 0.581
ECA0407
Putative integrase (partial); Similar to Shigella flexneri integrase intB or sf4224 SWALL:AAN45643 (EMBL:AE015430) (415 aa) fasta scores: E(): 5.6e-17, 81.48% id in 54 aa, and to Escherichia coli integrase inT SWALL:Q93SE7 (EMBL:AJ278144) (394 aa) fasta scores: E(): 1.7e-15, 70.9% id in 55 aa.
       0.455
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.