| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ECA0272 | ECA0420 | ECA0272 | ECA0420 | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.556 |
| ECA0272 | expM | ECA0272 | ECA2330 | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.749 |
| ECA0272 | rcsF | ECA0272 | ECA3527 | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | 0.692 |
| ECA0420 | ECA0272 | ECA0420 | ECA0272 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | 0.556 |
| ECA0420 | ECA0421 | ECA0420 | ECA0421 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Putative exported lipase; Similar to Zymomonas mobilis hypothetical protein SWALL:AAL36135 (EMBL:AY057845) (394 aa) fasta scores: E(): 2.9e-49, 41.3% id in 368 aa. Note that there are no significant database matches to enterobacterial species. | 0.407 |
| ECA0420 | ECA2595 | ECA0420 | ECA2595 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Similar to Yersinia pestis hypothetical protein Ypo1385 SWALL:Q8ZGB8 (EMBL:AJ414148) (588 aa) fasta scores: E(): 5.2e-206, 84.24% id in 584 aa, and to Escherichia coli hypothetical protein ycao or b0905 SWALL:YCAO_ECOLI (SWALL:P75838) (586 aa) fasta scores: E(): 1.9e-200, 81.84% id in 584 aa. | 0.445 |
| ECA0420 | argS | ECA0420 | ECA2520 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Similar to Escherichia coli arginyl-tRNA synthetase ArgS or b1876 SWALL:SYR_ECOLI (SWALL:P11875) (577 aa) fasta scores: E(): 4.1e-183, 80.24% id in 577 aa. | 0.414 |
| ECA0420 | expM | ECA0420 | ECA2330 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.457 |
| ECA0420 | rcsF | ECA0420 | ECA3527 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | 0.517 |
| ECA0420 | rplP | ECA0420 | ECA4024 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.559 |
| ECA0421 | ECA0420 | ECA0421 | ECA0420 | Putative exported lipase; Similar to Zymomonas mobilis hypothetical protein SWALL:AAL36135 (EMBL:AY057845) (394 aa) fasta scores: E(): 2.9e-49, 41.3% id in 368 aa. Note that there are no significant database matches to enterobacterial species. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.407 |
| ECA2595 | ECA0420 | ECA2595 | ECA0420 | Similar to Yersinia pestis hypothetical protein Ypo1385 SWALL:Q8ZGB8 (EMBL:AJ414148) (588 aa) fasta scores: E(): 5.2e-206, 84.24% id in 584 aa, and to Escherichia coli hypothetical protein ycao or b0905 SWALL:YCAO_ECOLI (SWALL:P75838) (586 aa) fasta scores: E(): 1.9e-200, 81.84% id in 584 aa. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.445 |
| argS | ECA0420 | ECA2520 | ECA0420 | Similar to Escherichia coli arginyl-tRNA synthetase ArgS or b1876 SWALL:SYR_ECOLI (SWALL:P11875) (577 aa) fasta scores: E(): 4.1e-183, 80.24% id in 577 aa. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.414 |
| expM | ECA0272 | ECA2330 | ECA0272 | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | 0.749 |
| expM | ECA0420 | ECA2330 | ECA0420 | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.457 |
| expM | rcsF | ECA2330 | ECA3527 | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | 0.774 |
| rcsF | ECA0272 | ECA3527 | ECA0272 | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | 0.692 |
| rcsF | ECA0420 | ECA3527 | ECA0420 | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.517 |
| rcsF | expM | ECA3527 | ECA2330 | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.774 |
| rplP | ECA0420 | ECA4024 | ECA0420 | 50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.559 |
