Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ECA0272 | ECA0420 | ECA0272 | ECA0420 | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.556 |
| ECA0272 | expM | ECA0272 | ECA2330 | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.749 |
| ECA0272 | rcsF | ECA0272 | ECA3527 | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | 0.692 |
| ECA0420 | ECA0272 | ECA0420 | ECA0272 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | 0.556 |
| ECA0420 | ECA0421 | ECA0420 | ECA0421 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Putative exported lipase; Similar to Zymomonas mobilis hypothetical protein SWALL:AAL36135 (EMBL:AY057845) (394 aa) fasta scores: E(): 2.9e-49, 41.3% id in 368 aa. Note that there are no significant database matches to enterobacterial species. | 0.407 |
| ECA0420 | ECA2595 | ECA0420 | ECA2595 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Similar to Yersinia pestis hypothetical protein Ypo1385 SWALL:Q8ZGB8 (EMBL:AJ414148) (588 aa) fasta scores: E(): 5.2e-206, 84.24% id in 584 aa, and to Escherichia coli hypothetical protein ycao or b0905 SWALL:YCAO_ECOLI (SWALL:P75838) (586 aa) fasta scores: E(): 1.9e-200, 81.84% id in 584 aa. | 0.438 |
| ECA0420 | expM | ECA0420 | ECA2330 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.457 |
| ECA0420 | rcsF | ECA0420 | ECA3527 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | 0.517 |
| ECA0420 | rplP | ECA0420 | ECA4024 | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | 0.691 |
| ECA0421 | ECA0420 | ECA0421 | ECA0420 | Putative exported lipase; Similar to Zymomonas mobilis hypothetical protein SWALL:AAL36135 (EMBL:AY057845) (394 aa) fasta scores: E(): 2.9e-49, 41.3% id in 368 aa. Note that there are no significant database matches to enterobacterial species. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.407 |
| ECA2595 | ECA0420 | ECA2595 | ECA0420 | Similar to Yersinia pestis hypothetical protein Ypo1385 SWALL:Q8ZGB8 (EMBL:AJ414148) (588 aa) fasta scores: E(): 5.2e-206, 84.24% id in 584 aa, and to Escherichia coli hypothetical protein ycao or b0905 SWALL:YCAO_ECOLI (SWALL:P75838) (586 aa) fasta scores: E(): 1.9e-200, 81.84% id in 584 aa. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.438 |
| expM | ECA0272 | ECA2330 | ECA0272 | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | 0.749 |
| expM | ECA0420 | ECA2330 | ECA0420 | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.457 |
| expM | rcsF | ECA2330 | ECA3527 | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | 0.754 |
| rcsF | ECA0272 | ECA3527 | ECA0272 | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | Similar to Yersinia pestis putative exported protein ypo3670 SWALL:Q8ZAW2 (EMBL:AJ414158) (1307 aa) fasta scores: E(): 0, 56.76% id in 1300 aa, and to Escherichia coli O6 hypothetical protein YhdP SWALL:AAN82440 (EMBL:AE016767) (1266 aa) fasta scores: E(): 2e-213, 54.68% id in 1282 aa. | 0.692 |
| rcsF | ECA0420 | ECA3527 | ECA0420 | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.517 |
| rcsF | expM | ECA3527 | ECA2330 | Stimulator of colanic acid capsule synthesis; Essential component of the Rcs signaling system, which controls transcription of numerous genes. Plays a role in signal transduction from the cell surface to the histidine kinase RcsC. May detect outer membrane defects; Belongs to the RcsF family. | Response regulator; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. | 0.754 |
| rplP | ECA0420 | ECA4024 | ECA0420 | 50S ribosomal subunit protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. | Putative transposase (pseudogene); This hit extended beyond the end of the feature by 1 aa and was clipped; HMMPfam hit to PF01527, DE Transposase, score 7.4e-25. | 0.691 |