STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0433Putative lipoprotein; Similar to Pseudomonas aeruginosa hypothetical protein pa2695 SWALL:Q9I0E7 (EMBL:AE004697) (367 aa) fasta scores: E(): 4.9e-93, 67.61% id in 352 aa, and to Escherichia coli hypothetical protein YaiW SWALL:YAIW_ECOLI (SWALL:P77562) (364 aa) fasta scores: E(): 4.5e-89, 66.02% id in 365 aa. (365 aa)    
Predicted Functional Partners:
ECA0108
Putative membrane protein; Similar to Shigella flexneri conserved hypothetical protein YdgC SWALL:AAN43211 (EMBL:AE015184) (111 aa) fasta scores: E(): 9.5e-27, 65.42% id in 107 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YdgC SWALL:YDGC_ECOLI (SWALL:P52110) (111 aa) fasta scores: E(): 9.5e-27, 65.42% id in 107 aa.
  
     0.554
ECA0432
Similar to Neisseria polysaccharea hypothetical protein SWALL:AAO17344 (EMBL:AF542178) (249 aa) fasta scores: E(): 4e-35, 38.97% id in 254 aa.
       0.522
ECA3084
Similar to Salmonella typhi putative membrane protein sty2625 SWALL:Q8Z4Y7 (EMBL:AL627274) (313 aa) fasta scores: E(): 4.1e-76, 65.06% id in 312 aa, and to Escherichia coli O157:H7 putative transport yfdc or z3611 or ecs3230 SWALL:Q8XCN1 (EMBL:AE005466) (310 aa) fasta scores: E(): 8.4e-76, 66% id in 300 aa.
  
     0.438
ECA1163
Conserved hypothetical lipoprotein; Similar to Salmonella typhimurium glycoprotein/polysaccharide metabolism ybay or stm0465 SWALL:Q8ZRB1 (EMBL:AE008717) (189 aa) fasta scores: E(): 4e-30, 50.78% id in 191 aa, and to Salmonella typhi hypothetical lipoprotein Sty0509 sty0509 SWALL:Q8Z8U2 (EMBL:AL627266) (189 aa) fasta scores: E(): 6.1e-30, 50.26% id in 189 aa.
  
     0.418
ECA0807
Putative membrane protein; Similar to Escherichia coli, and Shigella flexneri hypothetical protein YjcH SWALL:YJCH_ECOLI (SWALL:P32706) (104 aa) fasta scores: E(): 7.3e-27, 71.56% id in 102 aa, and to Salmonella typhi putative membrane protein sty4472 SWALL:Q8Z1R1 (EMBL:AL627282) (104 aa) fasta scores: E(): 1.7e-25, 70.58% id in 102 aa.
  
     0.406
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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