STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rhaBRhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family. (496 aa)    
Predicted Functional Partners:
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. Belongs to the aldolase class II family. RhaD subfamily.
 
 
 0.999
rhaA
Similar to Escherichia coli L-rhamnose isomerase RhaA or b3903 SWALL:RHAA_ECOLI (SWALL:P32170) (419 aa) fasta scores: E(): 5.5e-137, 79.66% id in 418 aa.
 
 
 0.999
rhaM
Conserved hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.904
rhaT
L-rhamnose-proton symport; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the L-rhamnose transporter (TC 2.A.7.6) family.
 
  
 0.732
araB
L-ribulokinase; Similar to Escherichia coli L-ribulokinase AraB or b0063 SWALL:ARAB_ECOLI (SWALL:P08204) (565 aa) fasta scores: E(): 7.7e-174, 71.79% id in 553 aa.
 
 
 0.674
xylA
Putative D-xylose isomerase; Similar to Escherichia coli xylose isomerase XylA SWALL:XYLA_ECOLI (SWALL:P00944) (440 aa) fasta scores: E(): 1.5e-155, 82.42% id in 438 aa.
  
 
 0.649
otnC
Putative sugar aldolase; Catalyzes the decarboxylation of 3-oxo-tetronate 4-phosphate to dihydroxyacetone phosphate (DHAP) and CO(2). Belongs to the aldolase class II family. AraD/FucA subfamily.
 
 
 0.608
araD
Similar to Escherichia coli L-ribulose-5-phosphate 4-epimerase AraD or b0061 SWALL:ARAD_ECOLI (SWALL:P08203) (231 aa) fasta scores: E(): 5.3e-74, 77.48% id in 231 aa.
 
 
 0.599
ptsH
PTS system phosphocarrier protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri phosphocarrier protein Hpr or b2415 or c2950 or z3681 or ecs3287 or stm2431 or sty2667 or t0426 or sf2470 SWALL:PTHP_ECOLI (SWALL:P07006) (85 aa) fasta scores: E(): 1e-27, 97.64% id in 85 aa.
    
 
 0.591
slyD
FkbP-type peptidyl-prolyl cis-trans isomerase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri FkbP-type peptidyl-prolyl cis-trans isomerase SlyD or b3349 or c4123 or z4707 or ecs4200 or sf3367 SWALL:SLYD_ECOLI (SWALL:P30856) (196 aa) fasta scores: E(): 1.3e-60, 84.92% id in 199 aa.
      
 0.573
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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