STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
rhaRL-rhamnose operon transcriptional activator; Activates expression of the rhaSR operon in response to L- rhamnose. (284 aa)    
Predicted Functional Partners:
rhaS
L-rhamnose operon regulatory protein; Activates expression of the rhaBAD and rhaT operons.
 
    
0.752
ECA1518
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 1.1e-30, 40.21% id in 281 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 4.3e-30, 35.44% id in 268 aa.
  
     0.614
rhaB
Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
 
   
 0.543
ECA2787
Similar to Pseudomonas putida transcriptional regulator, AraC family pp3022 SWALL:AAN68630 (EMBL:AE016785) (269 aa) fasta scores: E(): 5.3e-24, 35.03% id in 274 aa, and to Rhizobium meliloti putative transcription regulator protein r01128 or smc00558 SWALL:Q92R06 (EMBL:AL591786) (285 aa) fasta scores: E(): 1.2e-17, 29.65% id in 263 aa.
  
     0.517
ECA3837
AraC-family transcriptional regulator; Similar to Vibrio vulnificus AraC-type DNA-binding domain-containing protein vv20572 SWALL:AAO07518 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.1e-52, 48.36% id in 275 aa, and to Vibrio cholerae transcriptional regulator, AraC/XylS family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 3.6e-50, 50% id in 270 aa.
  
     0.508
ECA1902
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 1.8e-23, 31.85% id in 270 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20572 SWALL:Q8D6G1 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.4e-21, 30.65% id in 274 aa.
  
     0.503
ECA0615
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2430 SWALL:AAN68042 (EMBL:AE016783) (276 aa) fasta scores: E(): 1.1e-67, 56.72% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 2.1e-63, 53.65% id in 274 aa.
  
     0.480
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. Belongs to the aldolase class II family. RhaD subfamily.
 
     0.469
rhaT
L-rhamnose-proton symport; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the L-rhamnose transporter (TC 2.A.7.6) family.
  
  
 0.461
rhaA
Similar to Escherichia coli L-rhamnose isomerase RhaA or b3903 SWALL:RHAA_ECOLI (SWALL:P32170) (419 aa) fasta scores: E(): 5.5e-137, 79.66% id in 418 aa.
 
   
 0.454
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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