STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rhaRL-rhamnose operon transcriptional activator; Activates expression of the rhaSR operon in response to L- rhamnose. (284 aa)    
Predicted Functional Partners:
rhaS
L-rhamnose operon regulatory protein; Activates expression of the rhaBAD and rhaT operons.
 
    
0.751
ECA1518
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 1.1e-30, 40.21% id in 281 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 4.3e-30, 35.44% id in 268 aa.
  
     0.614
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
 0.574
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
     
 0.571
rhaB
Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
 
   
 0.533
ECA2787
Similar to Pseudomonas putida transcriptional regulator, AraC family pp3022 SWALL:AAN68630 (EMBL:AE016785) (269 aa) fasta scores: E(): 5.3e-24, 35.03% id in 274 aa, and to Rhizobium meliloti putative transcription regulator protein r01128 or smc00558 SWALL:Q92R06 (EMBL:AL591786) (285 aa) fasta scores: E(): 1.2e-17, 29.65% id in 263 aa.
  
     0.517
ECA3837
AraC-family transcriptional regulator; Similar to Vibrio vulnificus AraC-type DNA-binding domain-containing protein vv20572 SWALL:AAO07518 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.1e-52, 48.36% id in 275 aa, and to Vibrio cholerae transcriptional regulator, AraC/XylS family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 3.6e-50, 50% id in 270 aa.
  
     0.508
ECA1902
Similar to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 1.8e-23, 31.85% id in 270 aa, and to Vibrio vulnificus arac-type DNA-binding domain-containing protein vv20572 SWALL:Q8D6G1 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.4e-21, 30.65% id in 274 aa.
  
     0.503
ECA0615
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2430 SWALL:AAN68042 (EMBL:AE016783) (276 aa) fasta scores: E(): 1.1e-67, 56.72% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 2.1e-63, 53.65% id in 274 aa.
  
     0.480
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. Belongs to the aldolase class II family. RhaD subfamily.
 
     0.469
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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