STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0443Conserved hypothetical protein; Similar to Escherichia coli, and Shigella flexneri hypothetical protein YoeB SWALL:YOEB_ECOLI (SWALL:P56605) (84 aa) fasta scores: E(): 8.2e-31, 85.71% id in 84 aa. (84 aa)    
Predicted Functional Partners:
ECA0444
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
 
 
 0.989
ECA0064
Conserved hypothetical protein; Similar to Escherichia coli incf plasmid repfib replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 6.4e-27, 87.95% id in 83 aa, and to Escherichia coli Orf44 protein SWALL:Q9S122 (EMBL:AB024946) (83 aa) fasta scores: E(): 8.8e-27, 87.95% id in 83 aa.
  
 
 0.732
ECA0325
Similar to Erwinia pyrifoliae putative plasmid stability protein StbD stbD SWALL:AAN04532 (EMBL:AY123045) (84 aa) fasta scores: E(): 8.7e-27, 88.09% id in 84 aa, and to Morganella morganii stability protein StbD SWALL:Q9ZH43 (EMBL:AF072126) (83 aa) fasta scores: E(): 9.5e-18, 63.95% id in 86 aaand to Escherichia coli IncF plasmid RepFIB replicon SWALL:Q60256 (EMBL:M26308) (83 aa) fasta scores: E(): 7.6e-10, 43.59% id in 78 aa.
  
 
 0.732
ECA2242
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
 
 0.676
ECA0445
Similar to Bradyrhizobium japonicum ABC transporter ATP-binding protein blr1604 SWALL:BAC46869 (EMBL:AP005940) (626 aa) fasta scores: E(): 4.6e-90, 49.21% id in 573 aa, and to Agrobacterium tumefaciens MoaD SWALL:O50270 (EMBL:AF242881) (588 aa) fasta scores: E(): 2.2e-61, 39.78% id in 553 aa.
       0.566
ECA0446
Similar to Xanthomonas axonopodis ABC transporter permease OppC SWALL:Q8PP30 (EMBL:AE011717) (294 aa) fasta scores: E(): 8.7e-38, 43.26% id in 282 aa.
       0.566
ECA0447
Similar to Xanthomonas axonopodis ABC transporter permease oppC SWALL:Q8PP31 (EMBL:AE011717) (325 aa) fasta scores: E(): 2e-42, 43.27% id in 305 aa, and to Salmonella typhi hypothetical ABC transporter permease protein yliC SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 1.1e-34, 36.36% id in 308 aa.
       0.566
ECA0448
Similar to Xanthomonas axonopodis ABC transporter oligopeptide binding protein oppa or xac0856 SWALL:Q8PP32 (EMBL:AE011717) (538 aa) fasta scores: E(): 9.5e-59, 33.84% id in 526 aa, and to Escherichia coli O157:H7 periplasmic binding protein for nickel nika or z4868 or ecs4343 SWALL:Q8X5U3 (EMBL:AE005572) (524 aa) fasta scores: E(): 9.3e-27, 26.4% id in 534 aa.
       0.566
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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