STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0445Similar to Bradyrhizobium japonicum ABC transporter ATP-binding protein blr1604 SWALL:BAC46869 (EMBL:AP005940) (626 aa) fasta scores: E(): 4.6e-90, 49.21% id in 573 aa, and to Agrobacterium tumefaciens MoaD SWALL:O50270 (EMBL:AF242881) (588 aa) fasta scores: E(): 2.2e-61, 39.78% id in 553 aa. (569 aa)    
Predicted Functional Partners:
ECA0446
Similar to Xanthomonas axonopodis ABC transporter permease OppC SWALL:Q8PP30 (EMBL:AE011717) (294 aa) fasta scores: E(): 8.7e-38, 43.26% id in 282 aa.
  
 0.910
ECA0447
Similar to Xanthomonas axonopodis ABC transporter permease oppC SWALL:Q8PP31 (EMBL:AE011717) (325 aa) fasta scores: E(): 2e-42, 43.27% id in 305 aa, and to Salmonella typhi hypothetical ABC transporter permease protein yliC SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 1.1e-34, 36.36% id in 308 aa.
 
  
 0.906
ECA0448
Similar to Xanthomonas axonopodis ABC transporter oligopeptide binding protein oppa or xac0856 SWALL:Q8PP32 (EMBL:AE011717) (538 aa) fasta scores: E(): 9.5e-59, 33.84% id in 526 aa, and to Escherichia coli O157:H7 periplasmic binding protein for nickel nika or z4868 or ecs4343 SWALL:Q8X5U3 (EMBL:AE005572) (524 aa) fasta scores: E(): 9.3e-27, 26.4% id in 534 aa.
 
  
 0.832
ECA1006
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3435 or agr_l_2782 SWALL:Q8UAD9 (EMBL:AE009274) (341 aa) fasta scores: E(): 2.7e-69, 61.92% id in 302 aa, and to Rhizobium meliloti probable ABC transporter, permease protein ra1137 or sma2083 SWALL:Q92XV3 (EMBL:AE007299) (332 aa) fasta scores: E(): 5.3e-66, 65.92% id in 270 aa.
  
 0.717
ECA0073
ABC transporter permease protein; Similar to Corynebacterium efficiens putative transport protein ce2332 SWALL:BAC19142 (EMBL:AP005222) (305 aa) fasta scores: E(): 2.3e-58, 62.22% id in 270 aa, and to Escherichia coli hypothetical ABC transporter permease protein YliD SWALL:YLID_ECOLI (SWALL:P75799) (303 aa) fasta scores: E(): 1.3e-33, 38.34% id in 266 aa.
  
 0.691
ECA1548
Similar to Streptomyces coelicolor putative transport system permease protein sco6645 or sc4g2.19 SWALL:O86691 (EMBL:AL939128) (601 aa) fasta scores: E(): 9.4e-94, 50.35% id in 562 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein nikb or atu1198 or agr_c_2209 SWALL:Q8UG44 (EMBL:AE009082) (314 aa) fasta scores: E(): 3.6e-20, 31.33% id in 300 aa.
  
  
 0.672
ECA4421
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 2.7e-36, 40.14% id in 274 aa, and to Ralstonia solanacearum probable dipeptide transmembrane ABC transporter protein DppC2 or rsc1883 or rs03443 SWALL:Q8XY80 (EMBL:AL646067) (311 aa) fasta scores: E(): 4.2e-68, 61.75% id in 285 aa.
  
 0.664
ECA2961
Similar to Brucella abortus putative ABC transporter permease protein c batn1953.orf22 SWALL:Q8VQK5 (EMBL:AF454951) (296 aa) fasta scores: E(): 6.2e-46, 43.86% id in 269 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3267 or agr_l_3102 SWALL:Q8UAV0 (EMBL:AE009256) (291 aa) fasta scores: E(): 3.6e-45, 44.44% id in 270 aa.
  
 0.625
ECA0135
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 5.1e-44, 45.26% id in 285 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1382 or rs04665 SWALL:Q8XZL3 (EMBL:AL646064) (299 aa) fasta scores: E(): 3.3e-62, 57.71% id in 298 aa.
  
 0.615
ECA0074
Similar to Corynebacterium glutamicum ABC-type transporter, permease component cgl2438 SWALL:Q8NMX5 (EMBL:AP005281) (313 aa) fasta scores: E(): 3.9e-60, 55.15% id in 301 aa, and to Salmonella typhi hypothetical ABC transporter permease protein YliC SWALL:Q8Z862 (EMBL:AL627268) (306 aa) fasta scores: E(): 6.1e-30, 36.03% id in 308 aa.
 
  
 0.614
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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