STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0449Putative membrane protein; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YagU SWALL:YAGU_ECOLI (SWALL:P77262) (204 aa) fasta scores: E(): 1.6e-77, 88.23% id in 204 aa. (204 aa)    
Predicted Functional Partners:
ECA0128
Hypothetical protein; No significant database matches.
      
 0.544
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
      
 0.544
ECA1657
Hypothetical protein; No significant database matches.
      
 0.544
cysA
Sulphate ABC transporter ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
      
 0.544
ECA0610
Similar to Pseudomonas putida transcriptional regulator, LysR family pp5261 SWALL:AAN70826 (EMBL:AE016793) (308 aa) fasta scores: E(): 3.6e-24, 32.4% id in 287 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 glycine cleavage system transcriptional activator GcvA SWALL:GCVA_ECOLI (SWALL:P32064) (305 aa) fasta scores: E(): 2.4e-16, 31.13% id in 273 aa; Belongs to the LysR transcriptional regulatory family.
      
 0.542
ECA3672
Similar to Escherichia coli O6 conserved hypothetical protein c3767 SWALL:AAN82211 (EMBL:AE016766) (159 aa) fasta scores: E(): 1.4e-29, 51.28% id in 156 aa, and to Yersinia pestis putative membrane protein ypo2793 or y1136 SWALL:AAM84714 (EMBL:AJ414153) (190 aa) fasta scores: E(): 3.7e-51, 79.48% id in 156 aa.
      
 0.480
ECA0573
Putative plasmid-related protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62141 (EMBL:AF440523) (943 aa) fasta scores: E(): 1e-139, 50.22% id in 882 aa, and to Salmonella typhi hypothetical protein sty4573 sty4573 or t4270 SWALL:Q8Z1J2 (EMBL:AL627282) (807 aa) fasta scores: E(): 3.1e-216, 67.64% id in 819 aa, and to Providencia rettgeri TraC SWALL:Q8RKZ1 (EMBL:AY090559) (799 aa) fasta scores: E(): 0.56, 20.93% id in 812 aa.
      
 0.475
ECA0614
Putative phage integrase; Similar to Pseudomonas aeruginosa XerC SWALL:Q9F771 (EMBL:AF285416) (427 aa) fasta scores: E(): 7.2e-36, 36.52% id in 334 aa, and to Salmonella typhi probable phage integrase sty4666 or t4357 SWALL:Q8Z1C4 (EMBL:AL627283) (337 aa) fasta scores: E(): 2.2e-62, 48.37% id in 339 aa; Belongs to the 'phage' integrase family.
      
 0.472
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.