STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaTL-rhamnose-proton symport; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system). Belongs to the L-rhamnose transporter (TC 2.A.7.6) family. (344 aa)    
Predicted Functional Partners:
rhaB
Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
 
  
 0.638
rhaM
Conserved hypothetical protein; Involved in the anomeric conversion of L-rhamnose.
 
   
 0.634
modF
Similar to Escherichia coli putative molybdenum transport ATP-binding protein ModF or PhrA or b0760 SWALL:MODF_ECOLI (SWALL:P31060) (490 aa) fasta scores: E(): 2.7e-135, 73.82% id in 489 aa.
  
     0.617
rhaA
Similar to Escherichia coli L-rhamnose isomerase RhaA or b3903 SWALL:RHAA_ECOLI (SWALL:P32170) (419 aa) fasta scores: E(): 5.5e-137, 79.66% id in 418 aa.
 
  
 0.578
rhaD
Rhamnulose-1-phosphate aldolase; Catalyzes the reversible cleavage of L-rhamnulose-1-phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde. Belongs to the aldolase class II family. RhaD subfamily.
 
  
 0.515
ECA1967
Putative hexuronate transporter; Similar to Erwinia chrysanthemi ExuT SWALL:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 2.6e-53, 42.85% id in 329 aa, and to Yersinia pestis putative sugar transporter ypo0847 or ExuT or y3232 SWALL:AAM86782 (EMBL:AJ414145) (435 aa) fasta scores: E(): 1.2e-142, 77.03% id in 431 aa. Also similar to ECA0644 (44.039% id in 411 aa overlap).
  
    0.494
exuT
Galacturonate transporter; Similar to Erwinia chrysanthemi ExuT SWALL:P94774 (EMBL:U86689) (345 aa) fasta scores: E(): 6.4e-122, 88.78% id in 330 aa, and to Ralstonia solanacearum ExuT SWALL:Q93AS8 (EMBL:AF417111) (439 aa) fasta scores: E(): 2.8e-99, 56.39% id in 422 aa.
  
    0.473
rhaR
L-rhamnose operon transcriptional activator; Activates expression of the rhaSR operon in response to L- rhamnose.
  
  
 0.461
ECA1517
Putative membrane protein; Similar to Escherichia coli hypothetical protein ytff or b4210 SWALL:YTFF_ECOLI (SWALL:P39314) (324 aa) fasta scores: E(): 5.1e-83, 64.24% id in 316 aa, and to Salmonella typhimurium putative cationic amino acid transporter ytff or stm4400 SWALL:Q8ZK75 (EMBL:AE008906) (321 aa) fasta scores: E(): 6.8e-83, 64.59% id in 322 aa.
  
     0.426
ECA1934
Similar to Yersinia pestis putative lipoprotein ypo2371 SWALL:Q8ZE18 (EMBL:AJ414152) (104 aa) fasta scores: E(): 1.1e-16, 53.33% id in 105 aa, and to Yersinia enterocolitica hypothetical protein SWALL:YOR4_YEREN (SWALL:P28837) (101 aa) fasta scores: E(): 2.1e-15, 51.54% id in 97 aa.
  
     0.424
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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