STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0451Putative membrane protein; Similar to Salmonella typhi hypothetical protein yqha sty3326 or t3074 SWALL:YQHA_SALTI (SWALL:Q8Z3Q8) (164 aa) fasta scores: E(): 5.4e-49, 84.41% id in 154 aa, and to Pseudomonas aeruginosa hypothetical protein Pa4574 pa4574 SWALL:Y9H4_PSEAE (SWALL:Q9HVL0) (162 aa) fasta scores: E(): 7.2e-49, 83.11% id in 154 aa. (160 aa)    
Predicted Functional Partners:
ECA0452
Putative zinc-binding dehydrogenase; Similar to Pseudomonas aeruginosa hypothetical protein pa2197 SWALL:Q9I1S0 (EMBL:AE004646) (345 aa) fasta scores: E(): 1.9e-102, 75.94% id in 345 aa, and to Salmonella typhi putative NADP-dependent oxidoreductase sty1476 SWALL:Q8Z742 (EMBL:AL627270) (345 aa) fasta scores: E(): 1.7e-100, 76.23% id in 345 aa.
       0.532
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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