STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
osmYOsmotically inducible protein Y; Similar to Escherichia coli, and Escherichia coli O6 osmotically inducible protein Y precursor OsmY or b4376 or c5457 SWALL:OSMY_ECOLI (SWALL:P27291) (201 aa) fasta scores: E(): 6.7e-31, 56.93% id in 202 aa. (202 aa)    
Predicted Functional Partners:
ECA0470
Putative membrane protein; Similar to Escherichia coli O157:H7 hypothetical protein Z5978 SWALL:Q8X479 (EMBL:AE005669) (59 aa) fasta scores: E(): 3.4e-16, 98.11% id in 53 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein stm4562 or sty4912 SWALL:Q8XEW6 (EMBL:AE008914) (59 aa) fasta scores: E(): 4e-16, 96.22% id in 53 aa.
 
    0.820
ECA0471
Similar to Xanthomonas axonopodis hypothetical protein xac4007 SWALL:Q8PFH4 (EMBL:AE012049) (69 aa) fasta scores: E(): 6.4e-07, 47.36% id in 57 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri protein YjbJ SWALL:AAN45582 (EMBL:U00006) (71 aa) fasta scores: E(): 0.00014, 37.93% id in 58 aa.
 
    0.761
ECA0631
Conserved hypothetical protein; Similar to Escherichia coli O6 protein YjbJ SWALL:AAN83442 (EMBL:AE016770) (71 aa) fasta scores: E(): 1e-20, 76.05% id in 71 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein YjbJ SWALL:Q8XEL4 (EMBL:AE008898) (70 aa) fasta scores: E(): 5.4e-20, 77.14% id in 70 aa; Belongs to the UPF0337 (CsbD) family.
 
    0.732
ECA3015
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein ElaB or stm2311 or sty2542 SWALL:Q8XF60 (EMBL:AE008803) (103 aa) fasta scores: E(): 1e-19, 68.42% id in 95 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ElaB protein ElaB or b2266 or c2810 or z3526 or ecs3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 3.3e-19, 65.26% id in 95 aa.
 
  
 0.678
ECA1013
Putative lipoprotein; Similar to Escherichia coli, and Escherichia coli O6 hypothetical lipoprotein ygdi precursor ygdi or b2809 or c3380 SWALL:YGDI_ECOLI (SWALL:Q46924) (75 aa) fasta scores: E(): 1.6e-14, 61.11% id in 72 aa, and to Shigella flexneri orf, conserved hypothetical protein ygdi or sf2823 SWALL:AAN44310 (EMBL:AE015296) (76 aa) fasta scores: E(): 4.2e-14, 59.72% id in 72 aa.
 
    0.582
ECA2185
Putative membrane protein; Similar to Shigella flexneri orf, conserved hypothetical protein sf1208 SWALL:AAN42821 (EMBL:AE015147) (92 aa) fasta scores: E(): 5e-21, 57.14% id in 91 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ychh or b1205 or c1663 or z1976 or ecs1710 SWALL:YCHH_ECOLI (SWALL:P31807) (92 aa) fasta scores: E(): 5.8e-21, 57.14% id in 91 aa.
  
   
 0.578
elbB
Enhancing lycopene biosynthesis protein 2 (sigma cross-reacting protein 27a); Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate; Belongs to the peptidase C56 family.
      
 0.530
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
      
 0.530
ECA2211
Copper-zinc superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
  
 0.521
ECA0982
Putative lipoprotein; Similar to Salmonella typhimurium putative Pot family, peptide transport protein ygdr or stm3007 SWALL:Q8ZMA7 (EMBL:AE008838) (72 aa) fasta scores: E(): 5.8e-14, 61.11% id in 72 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein ygdr precursor ygdr or b2833 or c3428 or z4151 or ecs3690 or sf2843 SWALL:AAN81873 (EMBL:U29581) (72 aa) fasta scores: E(): 3.6e-13, 59.72% id in 72 aa.
  
    0.516
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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