STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0470Putative membrane protein; Similar to Escherichia coli O157:H7 hypothetical protein Z5978 SWALL:Q8X479 (EMBL:AE005669) (59 aa) fasta scores: E(): 3.4e-16, 98.11% id in 53 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein stm4562 or sty4912 SWALL:Q8XEW6 (EMBL:AE008914) (59 aa) fasta scores: E(): 4e-16, 96.22% id in 53 aa. (53 aa)    
Predicted Functional Partners:
ECA0631
Conserved hypothetical protein; Similar to Escherichia coli O6 protein YjbJ SWALL:AAN83442 (EMBL:AE016770) (71 aa) fasta scores: E(): 1e-20, 76.05% id in 71 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein YjbJ SWALL:Q8XEL4 (EMBL:AE008898) (70 aa) fasta scores: E(): 5.4e-20, 77.14% id in 70 aa; Belongs to the UPF0337 (CsbD) family.
 
  
 0.896
osmY
Osmotically inducible protein Y; Similar to Escherichia coli, and Escherichia coli O6 osmotically inducible protein Y precursor OsmY or b4376 or c5457 SWALL:OSMY_ECOLI (SWALL:P27291) (201 aa) fasta scores: E(): 6.7e-31, 56.93% id in 202 aa.
 
    0.819
ECA0471
Similar to Xanthomonas axonopodis hypothetical protein xac4007 SWALL:Q8PFH4 (EMBL:AE012049) (69 aa) fasta scores: E(): 6.4e-07, 47.36% id in 57 aa, and to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri protein YjbJ SWALL:AAN45582 (EMBL:U00006) (71 aa) fasta scores: E(): 0.00014, 37.93% id in 58 aa.
  
  
 0.817
ECA0982
Putative lipoprotein; Similar to Salmonella typhimurium putative Pot family, peptide transport protein ygdr or stm3007 SWALL:Q8ZMA7 (EMBL:AE008838) (72 aa) fasta scores: E(): 5.8e-14, 61.11% id in 72 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein ygdr precursor ygdr or b2833 or c3428 or z4151 or ecs3690 or sf2843 SWALL:AAN81873 (EMBL:U29581) (72 aa) fasta scores: E(): 3.6e-13, 59.72% id in 72 aa.
  
    0.706
ECA1013
Putative lipoprotein; Similar to Escherichia coli, and Escherichia coli O6 hypothetical lipoprotein ygdi precursor ygdi or b2809 or c3380 SWALL:YGDI_ECOLI (SWALL:Q46924) (75 aa) fasta scores: E(): 1.6e-14, 61.11% id in 72 aa, and to Shigella flexneri orf, conserved hypothetical protein ygdi or sf2823 SWALL:AAN44310 (EMBL:AE015296) (76 aa) fasta scores: E(): 4.2e-14, 59.72% id in 72 aa.
   
    0.619
ECA0319
Similar to Yersinia pestis putative exported protein ypo3551 SWALL:Q8ZB73 (EMBL:AJ414157) (191 aa) fasta scores: E(): 2.2e-47, 73.82% id in 191 aa, and to Escherichia coli lipoprotein EcfH SWALL:AAL01382 (EMBL:AF407015) (191 aa) fasta scores: E(): 5.6e-46, 71.72% id in 191 aa.
  
    0.614
wecH
Putative membrane protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
   
    0.528
ECA2047
Putative exported protein; Similar to Ralstonia solanacearum hypothetical protein rsc1651 or rs04028 SWALL:Q8XYV5 (EMBL:AL646065) (394 aa) fasta scores: E(): 5.6e-36, 34.18% id in 392 aa, and to Caulobacter crescentus hypothetical protein Cc1979 SWALL:Q9A6V4 (EMBL:AE005871) (407 aa) fasta scores: E(): 1.3e-16, 25.77% id in 388 aa.
   
    0.433
ECA0472
Putative TatD-family deoxyribonuclease; Similar to Yersinia pestis putative metalloenzyme ypo0434 SWALL:Q8ZIQ6 (EMBL:AJ414142) (262 aa) fasta scores: E(): 1.3e-62, 64.2% id in 257 aa, and to Escherichia coli putative deoxyribonuclease YjjV SWALL:YJJV_ECOLI (SWALL:P39408) (259 aa) fasta scores: E(): 1.8e-61, 62.45% id in 253 aa.
       0.407
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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