Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ECA0476Putative iron transporter; Similar to Stigmatella aurantiaca MxcK SWALL:Q9F632 (EMBL:AF299336) (407 aa) fasta scores: E(): 2.9e-29, 32.74% id in 394 aa, and to Azotobacter vinelandii AvxA SWALL:Q8KY99 (EMBL:AF238500) (407 aa) fasta scores: E(): 1.2e-25, 35.04% id in 371 aa. (416 aa)    
Predicted Functional Partners:
entF
Similar to Escherichia coli enterobactin synthetase component F EntF or b0586 SWALL:ENTF_ECOLI (SWALL:P11454) (1293 aa) fasta scores: E(): 2.4e-63, 30.4% id in 1069 aa, and to Stigmatella aurantiaca MxcG SWALL:Q9F636 (EMBL:AF299336) (1456 aa) fasta scores: E(): 6.8e-106, 41.03% id in 1065 aa.
 
   
 0.761
entB
Enterobactin synthetase component B (isochorismatase); Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa.
 
  
 0.732
ECA0475
TonB-dependent siderophore receptor protein; Similar to Escherichia coli colicin I receptor precursor CirA or Cir or FeuA or b2155 SWALL:CIRA_ECOLI (SWALL:P17315) (663 aa) fasta scores: E(): 9.5e-57, 36.61% id in 661 aa, and to Vibrio cholerae iron-regulated outer membrane virulence protein precursor IrgA or vc0475 SWALL:IRGA_VIBCH (SWALL:P27772) (652 aa) fasta scores: E(): 1.1e-48, 29.73% id in 676 aa.
 
     0.632
ECA0482
Putative non-ribosomal peptide synthetase; Similar to Bacillus subtilis fengycin synthetase FenE SWALL:O30981 (EMBL:AF023465) (2554 aa) fasta scores: E(): 1.3e-104, 31.95% id in 1546 aa, and to Pseudomonas putida non-ribosomal peptide synthetase domain protein, putative pp4220 SWALL:AAN69801 (EMBL:AE016789) (2628 aa) fasta scores: E(): 1.1e-112, 31.67% id in 2033 aa.
 
     0.499
entE
Similar to Escherichia coli enterobactin synthetase component E [includes: 2,3-dihydroxybenzoate-AMP ligase; S-dihydroxybenzoyltransferase] EntE SWALL:ENTE_ECOLI (SWALL:P10378) (536 aa) fasta scores: E(): 1.1e-129, 64.63% id in 540 aa; EC number 7.7.58.
 
    0.470
hcr
Similar to Escherichia coli NADH oxidoreductase Hcr or b0872 SWALL:HCR_ECOLI (SWALL:P75824) (322 aa) fasta scores: E(): 1.3e-46, 61.14% id in 332 aa.
      
 0.468
fecI
Similar to Escherichia coli probable RNA polymerase sigma factor FecI or b4293 SWALL:FECI_ECOLI (SWALL:P23484) (173 aa) fasta scores: E(): 1.1e-48, 78.61% id in 173 aa, and to Shigella flexneri 2a FecI SWALL:AAL08458 (EMBL:AF326777) (173 aa) fasta scores: E(): 1.1e-48, 78.61% id in 173 aa; Belongs to the sigma-70 factor family. ECF subfamily.
   
  
 0.467
hasR
TonB-dependent heme receptor; Similar to Serratia marcescens HasR protein SWALL:P72473 (EMBL:Y08983) (899 aa) fasta scores: E(): 2.1e-176, 62.03% id in 893 aa, and to Yersinia pestis putative TonB dependent receptor protein ypo3923 or hasr or y0313 SWALL:Q8ZA89 (EMBL:AJ414159) (830 aa) fasta scores: E(): 1.5e-86, 52.03% id in 786 aa.
      
 0.466
fecR
iron(III) dicitrate sensor protein; Similar to Escherichia coli protein FecR or b4292 SWALL:FECR_ECOLI (SWALL:P23485) (317 aa) fasta scores: E(): 7.6e-87, 69.55% id in 312 aa, and to Shigella flexneri 2a FecR SWALL:AAL08457 (EMBL:AF326777) (317 aa) fasta scores: E(): 7.6e-87, 69.55% id in 312 aa.
      
 0.463
fecA
iron(III) dicitrate transport protein; Similar to Escherichia coli iron FecA or b4291 SWALL:FECA_ECOLI (SWALL:P13036) (774 aa) fasta scores: E(): 0, 80.56% id in 782 aa, and to Pseudomonas aeruginosa FecA or pa3901 SWALL:Q9HXB2 (EMBL:AE004807) (784 aa) fasta scores: E(): 1.6e-196, 62.43% id in 788 aa.
      
 0.461
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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