STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wcaJPutative capsular polysaccharide biosynthesis protein; Similar to Escherichia coli putative colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ or b2047 SWALL:WCAJ_ECOLI (SWALL:P71241) (464 aa) fasta scores: E(): 6.8e-69, 43.62% id in 463 aa, and to Klebsiella pneumoniae probable CPS biosynthesis glycosyltransferase SWALL:YC14_KLEPN (SWALL:Q48460) (465 aa) fasta scores: E(): 1e-69, 43.95% id in 455 aa. (432 aa)    
Predicted Functional Partners:
ECA0502
Putative capsulatr polysaccharide biosynthesis protein; Similar to Rhizobium leguminosarum exopolysaccharide polymerization protein PssP SWALL:O85453 (EMBL:AF067140) (746 aa) fasta scores: E(): 8.1e-10, 23.42% id in 730 aa, and to Vibrio cholerae exopolysaccharide biosynthesis protein, putative vc0937 SWALL:Q9KTG5 (EMBL:AE004176) (737 aa) fasta scores: E(): 1.4e-44, 28.87% id in 717 aa.
 
  
 0.997
ECA0501
Similar to Vibrio vulnificus polysaccharide export-related protein vv12304 SWALL:AAO10680 (EMBL:AE016804) (174 aa) fasta scores: E(): 5.2e-31, 53.61% id in 166 aa, and to Brucella suis capsule polysaccharide export protein, putative br0783 SWALL:AAN29712 (EMBL:AE014383) (195 aa) fasta scores: E(): 5.5e-18, 37.91% id in 182 aa.
 
  
 0.988
rfbM
Similar to Escherichia coli mannose-1-phosphate guanylyltransferase ManC or CpsB or RfbM or b2049 SWALL:MANC_ECOLI (SWALL:P24174) (478 aa) fasta scores: E(): 2.1e-114, 60.88% id in 473 aa, and to Shigella flexneri mannose-1-phosphate guanyltransferase CpsB_1 or sf2112 SWALL:AAN43651 (EMBL:AE015227) (478 aa) fasta scores: E(): 5.5e-115, 61.31% id in 473 aa; Belongs to the mannose-6-phosphate isomerase type 2 family.
 
  
 0.975
ECA0507
Similar to Shigella boydii putative glycosyl transferase wbdS SWALL:Q93CU5 (EMBL:AF402312) (351 aa) fasta scores: E(): 7.8e-11, 23.69% id in 363 aa, and to Vibrio vulnificus putative glycosyltransferase protein vv12310 SWALL:AAO10686 (EMBL:AE016804) (368 aa) fasta scores: E(): 3.5e-94, 66.85% id in 362 aa.
 
  
 0.956
ECA0506
Probable capsular polysaccharide bisynthesis glycosyl transferase; Similar to Klebsiella pneumoniae WbdC SWALL:Q9RMT8 (EMBL:AF189151) (274 aa) fasta scores: E(): 8.9e-10, 28.04% id in 246 aa, and to Vibrio vulnificus putative glycosyltransferase protein vv12309 SWALL:AAO10685 (EMBL:AE016804) (401 aa) fasta scores: E(): 5e-95, 60% id in 400 aa.
 
  
 0.954
ECA0500
Putative capsular polysaccharide biosynthesis protein; Similar to Methylobacillus sp. 12S EpsL epsL SWALL:BAC55133 (EMBL:AB062506) (401 aa) fasta scores: E(): 4, 20.86% id in 393 aa, and to Vibrio vulnificus conserved hypothetical protein vv12303 SWALL:AAO10679 (EMBL:AE016804) (416 aa) fasta scores: E(): 4e-82, 46.98% id in 415 aa.
     0.917
wza
Putative polysaccharide export protein; Similar to Escherichia coli, and Escherichia coli O157:H7 putative polysaccharide export protein Wza precursor Wza or b2062 or z3227 or ecs2867 SWALL:WZA_ECOLI (SWALL:P76388) (379 aa) fasta scores: E(): 3.3e-105, 68.86% id in 379 aa.
 
  
 0.907
arnB
Putative lipopolysaccharide biosynthesis protein; Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily.
  
 0.901
rffA
Lipopolysaccharide biosynthesis protein; Catalyzes the synthesis of dTDP-4-amino-4,6-dideoxy-D- galactose (dTDP-Fuc4N) from dTDP-4-keto-6-deoxy-D-glucose (dTDP-D- Glc4O) and L-glutamate; Belongs to the DegT/DnrJ/EryC1 family.
  
 0.900
ECA2046
Putative bifunctional enzyme including aminotransferase and chitin synthase; Its N-terminal half is similar to several aminotransferases including Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1.6e-29, 32.31% id in 359 aa, and to Streptomyces globisporus amino transferase SWALL:AAL06659 (EMBL:AY048670) (410 aa) fasta scores: E(): 9.5e-29, 32.32% id in 396 aa. Its C-terminal half is similar to many chitin synthases such as Saprolegnia monoica chitin synthase chS SWALL:CHS_SAPMO (SWALL:P48017) (886 aa) fasta scores: E(): 6.2e-20, 24% id in 525 aa, and to [...]
 
  
 0.898
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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