STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0508Putative membrane protein; Similar to Vibrio vulnificus hypothetical protein vv12311 SWALL:AAO10687 (EMBL:AE016804) (134 aa) fasta scores: E(): 1e-16, 45.92% id in 135 aa. (135 aa)    
Predicted Functional Partners:
ECA0505
Probable capsular polysaccharide bisynthesis glycosyl transferase; Similar to Vibrio vulnificus putative glycosyltransferase protein vv12308 SWALL:AAO10684 (EMBL:AE016804) (332 aa) fasta scores: E(): 7.6e-86, 64.81% id in 324 aa, and to Rhizobium meliloti putative glycosyltransferase protein rb1330 or smb21500 SWALL:Q92U13 (EMBL:AL603646) (347 aa) fasta scores: E(): 5.2e-37, 37.42% id in 326 aa.
 
     0.930
ECA0500
Putative capsular polysaccharide biosynthesis protein; Similar to Methylobacillus sp. 12S EpsL epsL SWALL:BAC55133 (EMBL:AB062506) (401 aa) fasta scores: E(): 4, 20.86% id in 393 aa, and to Vibrio vulnificus conserved hypothetical protein vv12303 SWALL:AAO10679 (EMBL:AE016804) (416 aa) fasta scores: E(): 4e-82, 46.98% id in 415 aa.
 
     0.924
ECA0509
Putative exported protein; Similar to Vibrio vulnificus hypothetical protein vv12312 SWALL:AAO10688 (EMBL:AE016804) (492 aa) fasta scores: E(): 5.5e-105, 53.91% id in 447 aa. No other significant database matches.
 
     0.919
ECA0502
Putative capsulatr polysaccharide biosynthesis protein; Similar to Rhizobium leguminosarum exopolysaccharide polymerization protein PssP SWALL:O85453 (EMBL:AF067140) (746 aa) fasta scores: E(): 8.1e-10, 23.42% id in 730 aa, and to Vibrio cholerae exopolysaccharide biosynthesis protein, putative vc0937 SWALL:Q9KTG5 (EMBL:AE004176) (737 aa) fasta scores: E(): 1.4e-44, 28.87% id in 717 aa.
 
     0.881
ECA0506
Probable capsular polysaccharide bisynthesis glycosyl transferase; Similar to Klebsiella pneumoniae WbdC SWALL:Q9RMT8 (EMBL:AF189151) (274 aa) fasta scores: E(): 8.9e-10, 28.04% id in 246 aa, and to Vibrio vulnificus putative glycosyltransferase protein vv12309 SWALL:AAO10685 (EMBL:AE016804) (401 aa) fasta scores: E(): 5e-95, 60% id in 400 aa.
 
     0.877
ECA0507
Similar to Shigella boydii putative glycosyl transferase wbdS SWALL:Q93CU5 (EMBL:AF402312) (351 aa) fasta scores: E(): 7.8e-11, 23.69% id in 363 aa, and to Vibrio vulnificus putative glycosyltransferase protein vv12310 SWALL:AAO10686 (EMBL:AE016804) (368 aa) fasta scores: E(): 3.5e-94, 66.85% id in 362 aa.
 
     0.860
ECA0501
Similar to Vibrio vulnificus polysaccharide export-related protein vv12304 SWALL:AAO10680 (EMBL:AE016804) (174 aa) fasta scores: E(): 5.2e-31, 53.61% id in 166 aa, and to Brucella suis capsule polysaccharide export protein, putative br0783 SWALL:AAN29712 (EMBL:AE014383) (195 aa) fasta scores: E(): 5.5e-18, 37.91% id in 182 aa.
 
     0.763
wcaJ
Putative capsular polysaccharide biosynthesis protein; Similar to Escherichia coli putative colanic biosynthesis UDP-glucose lipid carrier transferase WcaJ or b2047 SWALL:WCAJ_ECOLI (SWALL:P71241) (464 aa) fasta scores: E(): 6.8e-69, 43.62% id in 463 aa, and to Klebsiella pneumoniae probable CPS biosynthesis glycosyltransferase SWALL:YC14_KLEPN (SWALL:Q48460) (465 aa) fasta scores: E(): 1e-69, 43.95% id in 455 aa.
 
     0.758
ECA0503
Putative capsular polysaccharide bisynthesis protein; Similar to Rhizobium meliloti succinoglycan biosynthesis transport protein ExoT or rb1074 or smb20950 SWALL:EXOT_RHIME (SWALL:P33699) (494 aa) fasta scores: E(): 0.042, 19.1% id in 335 aa, and to Vibrio vulnificus hypothetical protein vv12306 SWALL:AAO10682 (EMBL:AE016804) (411 aa) fasta scores: E(): 1e-94, 57.56% id in 403 aa, and to Staphylococcus aureus Cap8K SWALL:P72377 (EMBL:U73374) (412 aa) fasta scores: E(): 2.9e-09, 19.75% id in 400 aa.
       0.726
ECA0504
Putative capsular polysaccharide bisynthesis protein; Similar to Streptococcus agalactiae CpsH or cpsiaH SWALL:Q8VL36 (EMBL:AF332914) (379 aa) fasta scores: E(): 0.76, 18.88% id in 360 aa, and to Vibrio vulnificus hypothetical protein vv12307 SWALL:AAO10683 (EMBL:AE016804) (466 aa) fasta scores: E(): 7.4e-117, 61.31% id in 455 aa.
       0.726
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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