Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ECA0514Putative membrane protein; No significant database matches.Possible false CDS. (52 aa)    
Predicted Functional Partners:
ECA0515
Similar to Yersinia pestis hypothetical protein ypo0874 SWALL:AAM86806 (EMBL:AJ414145) (380 aa) fasta scores: E(): 7.1e-116, 75.26% id in 380 aa.
       0.478
ECA0513
Putative phage transcriptional regulator; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri sugar fermentation stimulation protein B SfsB or Nlp or sfs7 or b3188 or c3946 or z4551 or ecs4067 or sf3228 SWALL:SFSB_ECOLI (SWALL:P18837) (92 aa) fasta scores: E(): 5.5e-15, 71.87% id in 64 aa, and to Bacteriophage Mu DNA-binding protein Ner or CII or 2 SWALL:NER_BPMU (SWALL:P06020) (74 aa) fasta scores: E(): 3.8e-13, 64.61% id in 65 aa. Also similar to ECA0686 (71.233% id. in 73 aa overlap), and to ECA0966 (91.139% id. in 79 aa overlap), and to [...]
       0.477
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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