STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0515Similar to Yersinia pestis hypothetical protein ypo0874 SWALL:AAM86806 (EMBL:AJ414145) (380 aa) fasta scores: E(): 7.1e-116, 75.26% id in 380 aa. (380 aa)    
Predicted Functional Partners:
ECA0516
Similar to Salmonella typhi hypothetical protein Sty4521 SWALL:Q8Z1M3 (EMBL:AL627282) (344 aa) fasta scores: E(): 1.8e-79, 73.03% id in 293 aa.
     
 0.729
topB
Similar to Pseudomonas aeruginosa putative DNA topoisomerase III TopB SWALL:AAN62194 (EMBL:AF440523) (676 aa) fasta scores: E(): 7.1e-127, 46.77% id in 667 aa, and to Salmonella typhi topoisomerase B TopB or sty4530 SWALL:Q9RHF5 (EMBL:AF000001) (664 aa) fasta scores: E(): 2.3e-171, 61.04% id in 670 aa.
     
 0.640
ECA0582
Putative plasmid-related protein; Similar to Escherichia coli PemK protein pemK SWALL:PEMK_ECOLI (SWALL:P13976) (133 aa) fasta scores: E(): 3e-07, 33.33% id in 111 aa, and to Plasmid R100 plasmid stable inheritance protein pemK SWALL:BAA78898 (EMBL:AP000342) (133 aa) fasta scores: E(): 3e-07, 33.33% id in 111 aa.
 
   
 0.546
ECA0614
Putative phage integrase; Similar to Pseudomonas aeruginosa XerC SWALL:Q9F771 (EMBL:AF285416) (427 aa) fasta scores: E(): 7.2e-36, 36.52% id in 334 aa, and to Salmonella typhi probable phage integrase sty4666 or t4357 SWALL:Q8Z1C4 (EMBL:AL627283) (337 aa) fasta scores: E(): 2.2e-62, 48.37% id in 339 aa; Belongs to the 'phage' integrase family.
     
 0.546
pilL
Putative Type IV pilus protein; Similar to Salmonella dublin, and Salmonella typhi PilL SWALL:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 8.9e-32, 44.98% id in 449 aa, and to Yersinia pseudotuberculosis PilL SWALL:Q8KR32 (EMBL:AY047316) (356 aa) fasta scores: E(): 3.8e-31, 42.72% id in 440 aa.
      
 0.544
ECA0615
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2430 SWALL:AAN68042 (EMBL:AE016783) (276 aa) fasta scores: E(): 1.1e-67, 56.72% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 2.1e-63, 53.65% id in 274 aa.
      
 0.544
ECA0584
Similar to Bacillus coagulans restriction enzyme bgci alpha subunit bcgiA SWALL:T4BA_BACCO (SWALL:Q07605) (637 aa) fasta scores: E(): 1.3e-46, 31.12% id in 633 aa, and to Staphylococcus aureus bacteriophage phi-42 hypothetical 72.6 kDa protein SWALL:P95687 (EMBL:X94423) (639 aa) fasta scores: E(): 1.9e-42, 30.78% id in 653 aa.
   
 
 0.529
ECA0585
Similar to Bacillus coagulans restriction enzyme bgci beta subunit BcgiB SWALL:T4BB_BACCO (SWALL:Q07606) (341 aa) fasta scores: E(): 3.2e-05, 24.05% id in 345 aa, and to Pseudomonas syringae conserved domain protein pspto0285 SWALL:Q88AU8 (EMBL:AE016856) (360 aa) fasta scores: E(): 0.035, 23.75% id in 320 aa.
   
 
 0.529
ECA0587
Conserved hypothetical protein; Similar to Yersinia pestis putative DNA-binding prophage protein ypo1092 SWALL:Q8ZH21 (EMBL:AJ414146) (298 aa) fasta scores: E(): 4.4e-48, 48.79% id in 291 aa, and to Salmonella typhi hypothetical protein sty4586 SWALL:Q8Z1I0 (EMBL:AL627282) (306 aa) fasta scores: E(): 3e-46, 46.57% id in 292 aa, and to Salmonella typhimurium putative integrase stm2760 SWALL:Q8ZMP4 (EMBL:AE008825) (291 aa) fasta scores: E(): 9.7e-46, 46.07% id in 293 aa.
     
 0.505
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
     
 0.504
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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