STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilLPutative Type IV pilus protein; Similar to Salmonella dublin, and Salmonella typhi PilL SWALL:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 8.9e-32, 44.98% id in 449 aa, and to Yersinia pseudotuberculosis PilL SWALL:Q8KR32 (EMBL:AY047316) (356 aa) fasta scores: E(): 3.8e-31, 42.72% id in 440 aa. (438 aa)    
Predicted Functional Partners:
ECA0516
Similar to Salmonella typhi hypothetical protein Sty4521 SWALL:Q8Z1M3 (EMBL:AL627282) (344 aa) fasta scores: E(): 1.8e-79, 73.03% id in 293 aa.
 
   
 0.864
pilN
Putative Type IV pilus protein; Similar to Escherichia coli, and Salmonella typhimurium lipoprotein PilN SWALL:O07372 (EMBL:AB021078) (560 aa) fasta scores: E(): 8.1e-61, 40.71% id in 560 aa.
 
     0.806
ECA0555
Similar to Salmonella typhi putative exported protein sty4558 SWALL:Q8Z1K6 (EMBL:AL627282) (246 aa) fasta scores: E(): 5.1e-52, 56.46% id in 232 aa.
 
     0.802
ECA0557
Putative exported protein; Similar to Salmonella typhi hypothetical protein sty4560 SWALL:Q8Z1K4 (EMBL:AL627282) (166 aa) fasta scores: E(): 1.5e-21, 46.1% id in 154 aa.
 
     0.799
ECA0561
Putative membrane protein; Similar to Pseudomonas putida hypothetical 27.8 kDa protein SWALL:Q8VMJ4 (EMBL:AJ344068) (249 aa) fasta scores: E(): 1.3e-35, 41.27% id in 252 aa, and to Salmonella typhi putative membrane protein sty4563 or t4261 SWALL:Q8Z1K1 (EMBL:AL627282) (252 aa) fasta scores: E(): 4.6e-55, 57.95% id in 245 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62289 (EMBL:AF440524) (249 aa) fasta scores: E(): 1.2e-34, 39.68% id in 252 aa.
 
     0.799
ECA0568
Putative membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62145 (EMBL:AF440523) (230 aa) fasta scores: E(): 1.5e-46, 53.42% id in 219 aa, and to Salmonella typhi possible exported protein sty4568 or t4265 SWALL:Q8Z1J7 (EMBL:AL627282) (217 aa) fasta scores: E(): 1.1e-66, 72.22% id in 216 aa, and to Pseudomonas putida hypothetical 29.5 kDa protein SWALL:Q8VMJ0 (EMBL:AJ344068) (267 aa) fasta scores: E(): 6.9e-46, 53.67% id in 218 aa.
 
     0.799
ECA0569
Putative exported protein; Similar to Pseudomonas putida hypothetical 31.9 kDa protein SWALL:Q8VMJ1 (EMBL:AJ344068) (302 aa) fasta scores: E(): 2.7e-39, 51.31% id in 267 aa, and to Salmonella typhi hypothetical protein sty4569 or t4266 SWALL:Q8Z1J6 (EMBL:AL627282) (299 aa) fasta scores: E(): 3.2e-55, 57.19% id in 292 aa, and to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62144 (EMBL:AF440523) (303 aa) fasta scores: E(): 4e-41, 45.24% id in 305 aa.
 
     0.799
ECA0577
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62273 (EMBL:AF440524) (311 aa) fasta scores: E(): 7.4e-40, 49.22% id in 323 aa, and to Salmonella typhi hypothetical protein sty4576 sty4576 or t4273 SWALL:Q8Z1I9 (EMBL:AL627282) (322 aa) fasta scores: E(): 3e-85, 66.77% id in 319 aa.
 
     0.799
ECA0578
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62272 (EMBL:AF440524) (467 aa) fasta scores: E(): 7.4e-32, 38.82% id in 461 aa, and to Salmonella typhi hypothetical protein sty4577 sty4577 or t4274 SWALL:Q8Z1I8 (EMBL:AL627282) (476 aa) fasta scores: E(): 7.1e-96, 61.5% id in 439 aa.
 
     0.799
ECA0570
Putative exported protein; Similar to Pseudomonas aeruginosa hypothetical protein SWALL:AAN62143 (EMBL:AF440523) (472 aa) fasta scores: E(): 5.8e-46, 41.17% id in 493 aa, and to Salmonella typhi putative exported protein sty4570 SWALL:Q8Z1J5 (EMBL:AL627282) (492 aa) fasta scores: E(): 5e-67, 54.08% id in 514 aa, and to Pseudomonas putida hypothetical 51.2 kDa protein SWALL:Q8VMJ2 (EMBL:AJ344068) (482 aa) fasta scores: E(): 6.1e-31, 40.14% id in 426 aa.
 
     0.795
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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