STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilMPutative Type IV pilus protein; Similar to Escherichia coli, and Salmonella typhimurium PilM protein SWALL:O07371 (EMBL:AB021078) (145 aa) fasta scores: E(): 2.4e-05, 29.45% id in 146 aa. (148 aa)    
Predicted Functional Partners:
pilL
Putative Type IV pilus protein; Similar to Salmonella dublin, and Salmonella typhi PilL SWALL:Q9K334 (EMBL:AF247502) (414 aa) fasta scores: E(): 8.9e-32, 44.98% id in 449 aa, and to Yersinia pseudotuberculosis PilL SWALL:Q8KR32 (EMBL:AY047316) (356 aa) fasta scores: E(): 3.8e-31, 42.72% id in 440 aa.
       0.773
pilN
Putative Type IV pilus protein; Similar to Escherichia coli, and Salmonella typhimurium lipoprotein PilN SWALL:O07372 (EMBL:AB021078) (560 aa) fasta scores: E(): 8.1e-61, 40.71% id in 560 aa.
       0.741
ECA0531
PS00736 Single-strand binding protein family signature 2.
       0.479
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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