Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pilPPutative Type IV pilus protein (pseudogene); Signal peptide predicted for ECA0537 by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.996 between residues 18 and 19. (165 aa)    
Predicted Functional Partners:
pilQ
Putative Type IV pilus nucleotide-binding protein; Similar to Escherichia coli, and Salmonella typhimurium nucleotide-binding protein PilQ SWALL:O07375 (EMBL:AB021078) (517 aa) fasta scores: E(): 2.7e-42, 32.67% id in 508 aa, and to Yersinia pseudotuberculosis nucleotide-binding protein PilQ SWALL:Q8KR27 (EMBL:AY047316) (517 aa) fasta scores: E(): 4.4e-46, 33.99% id in 506 aa.
       0.773
pilR
Putative Type IV pilus protein; Similar to Escherichia coli, and Salmonella typhimurium integral membrane protein PilR SWALL:O07376 (EMBL:AB021078) (365 aa) fasta scores: E(): 7.1e-24, 29.68% id in 347 aa, and to Yersinia pseudotuberculosis integral membrane protein PilR SWALL:Q8KR26 (EMBL:AY047316) (369 aa) fasta scores: E(): 5.5e-23, 30.2% id in 341 aa.
       0.491
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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