STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilRPutative Type IV pilus protein; Similar to Escherichia coli, and Salmonella typhimurium integral membrane protein PilR SWALL:O07376 (EMBL:AB021078) (365 aa) fasta scores: E(): 7.1e-24, 29.68% id in 347 aa, and to Yersinia pseudotuberculosis integral membrane protein PilR SWALL:Q8KR26 (EMBL:AY047316) (369 aa) fasta scores: E(): 5.5e-23, 30.2% id in 341 aa. (345 aa)    
Predicted Functional Partners:
pilQ
Putative Type IV pilus nucleotide-binding protein; Similar to Escherichia coli, and Salmonella typhimurium nucleotide-binding protein PilQ SWALL:O07375 (EMBL:AB021078) (517 aa) fasta scores: E(): 2.7e-42, 32.67% id in 508 aa, and to Yersinia pseudotuberculosis nucleotide-binding protein PilQ SWALL:Q8KR27 (EMBL:AY047316) (517 aa) fasta scores: E(): 4.4e-46, 33.99% id in 506 aa.
 
 
 0.862
pilT
Putative Type IV pilus protein; Similar to Salmonella typhi, and Salmonella dublin PilT protein PilT or sty4548 SWALL:Q9ZIU8 (EMBL:AF000001) (158 aa) fasta scores: E(): 2.3e-28, 55.07% id in 138 aa, and to Escherichia coli, and Salmonella typhimurium PilT protein PilT SWALL:O07378 (EMBL:AB021078) (186 aa) fasta scores: E(): 7.9e-28, 45.88% id in 170 aa.
 
     0.848
pilN
Putative Type IV pilus protein; Similar to Escherichia coli, and Salmonella typhimurium lipoprotein PilN SWALL:O07372 (EMBL:AB021078) (560 aa) fasta scores: E(): 8.1e-61, 40.71% id in 560 aa.
 
  
 0.843
pilV
Putative Type IV pilus prepilin protein; Similar to Escherichia coli PilV protein PilV SWALL:Q04905 (EMBL:X62169) (417 aa) fasta scores: E(): 8.8e-12, 32.47% id in 428 aa, and to Salmonella typhi PilV or sty4550 or t4250 SWALL:O51801 (EMBL:AF000001) (435 aa) fasta scores: E(): 7.5e-13, 26.49% id in 453 aa.
  
  
 0.820
hrcC
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcC SWALL:Q93FZ1 (EMBL:AF302656) (689 aa) fasta scores: E(): 0, 95.78% id in 688 aa, and to Erwinia amylovora HrcC precursor SWALL:Q46625 (EMBL:U56662) (676 aa) fasta scores: E(): 1.3e-169, 68.65% id in 654 aa.
 
  
 0.723
outE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.701
hofB
Similar to Escherichia coli protein transport protein HofB or HopB or b0107 SWALL:HOFB_ECOLI (SWALL:P36645) (461 aa) fasta scores: E(): 3.2e-77, 51.06% id in 470 aa.
  
 
 0.701
ECA2558
Similar to Yersinia pestis putative membrane protein ypo1394 or y2778 SWALL:Q8ZGB0 (EMBL:AJ414148) (763 aa) fasta scores: E(): 7.2e-161, 50.19% id in 763 aa, and to Salmonella typhi putative competence-related protein sty0984 SWALL:Q8Z802 (EMBL:AL627268) (754 aa) fasta scores: E(): 7.2e-126, 42.52% id in 762 aa.
  
  
 0.696
pilS
Similar to Yersinia pseudotuberculosis type IV prepilin PilS SWALL:Q8KR25 (EMBL:AY047316) (195 aa) fasta scores: E(): 1.2e-05, 31.84% id in 179 aa, and to Escherichia coli type IV prepilin PilS SWALL:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.013, 29.05% id in 179 aa.
     
 0.657
pilU
Similar to Shigella sonnei prepilin peptidase PilU SWALL:Q9R2J4 (EMBL:AB021078) (218 aa) fasta scores: E(): 0.029, 26.33% id in 224 aa, and to Salmonella typhimurium prepilin peptidase pPilU SWALL:O07379 (EMBL:AB027308) (218 aa) fasta scores: E(): 0.025, 26.33% id in 224 aa.
       0.601
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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