STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilVPutative Type IV pilus prepilin protein; Similar to Escherichia coli PilV protein PilV SWALL:Q04905 (EMBL:X62169) (417 aa) fasta scores: E(): 8.8e-12, 32.47% id in 428 aa, and to Salmonella typhi PilV or sty4550 or t4250 SWALL:O51801 (EMBL:AF000001) (435 aa) fasta scores: E(): 7.5e-13, 26.49% id in 453 aa. (464 aa)    
Predicted Functional Partners:
pilR
Putative Type IV pilus protein; Similar to Escherichia coli, and Salmonella typhimurium integral membrane protein PilR SWALL:O07376 (EMBL:AB021078) (365 aa) fasta scores: E(): 7.1e-24, 29.68% id in 347 aa, and to Yersinia pseudotuberculosis integral membrane protein PilR SWALL:Q8KR26 (EMBL:AY047316) (369 aa) fasta scores: E(): 5.5e-23, 30.2% id in 341 aa.
  
  
 0.820
pilS
Similar to Yersinia pseudotuberculosis type IV prepilin PilS SWALL:Q8KR25 (EMBL:AY047316) (195 aa) fasta scores: E(): 1.2e-05, 31.84% id in 179 aa, and to Escherichia coli type IV prepilin PilS SWALL:O88170 (EMBL:AB007463) (204 aa) fasta scores: E(): 0.013, 29.05% id in 179 aa.
     
 0.775
ECA0545
Alternative C-terminus for the PilV protein (fragment); Similar to the C-terminal region of Escherichia coli PilV SWALL:AAL18837 (EMBL:AY258503) (454 aa) fasta scores: E(): 6.6e-10, 36.3% id in 157 aa, and to Salmonella typhi probable variable tail fibre protein sty3691 SWALL:Q8Z343 (EMBL:AL627279) (504 aa) fasta scores: E(): 1.5e-13, 39.58% id in 144 aa.
       0.773
pilT
Putative Type IV pilus protein; Similar to Salmonella typhi, and Salmonella dublin PilT protein PilT or sty4548 SWALL:Q9ZIU8 (EMBL:AF000001) (158 aa) fasta scores: E(): 2.3e-28, 55.07% id in 138 aa, and to Escherichia coli, and Salmonella typhimurium PilT protein PilT SWALL:O07378 (EMBL:AB021078) (186 aa) fasta scores: E(): 7.9e-28, 45.88% id in 170 aa.
       0.769
pilU
Similar to Shigella sonnei prepilin peptidase PilU SWALL:Q9R2J4 (EMBL:AB021078) (218 aa) fasta scores: E(): 0.029, 26.33% id in 224 aa, and to Salmonella typhimurium prepilin peptidase pPilU SWALL:O07379 (EMBL:AB027308) (218 aa) fasta scores: E(): 0.025, 26.33% id in 224 aa.
       0.741
pilQ
Putative Type IV pilus nucleotide-binding protein; Similar to Escherichia coli, and Salmonella typhimurium nucleotide-binding protein PilQ SWALL:O07375 (EMBL:AB021078) (517 aa) fasta scores: E(): 2.7e-42, 32.67% id in 508 aa, and to Yersinia pseudotuberculosis nucleotide-binding protein PilQ SWALL:Q8KR27 (EMBL:AY047316) (517 aa) fasta scores: E(): 4.4e-46, 33.99% id in 506 aa.
  
 
 0.721
ECA2558
Similar to Yersinia pestis putative membrane protein ypo1394 or y2778 SWALL:Q8ZGB0 (EMBL:AJ414148) (763 aa) fasta scores: E(): 7.2e-161, 50.19% id in 763 aa, and to Salmonella typhi putative competence-related protein sty0984 SWALL:Q8Z802 (EMBL:AL627268) (754 aa) fasta scores: E(): 7.2e-126, 42.52% id in 762 aa.
  
  
 0.608
outK
Similar to Erwinia carotovora general secretion pathway protein K OutK SWALL:GSPK_ERWCA (SWALL:P31706) (328 aa) fasta scores: E(): 5.7e-125, 95.12% id in 328 aa, and to Erwinia chrysanthemi general secretion pathway protein K OutK SWALL:GSPK_ERWCH (SWALL:P24690) (354 aa) fasta scores: E(): 8.7e-44, 50.69% id in 359 aa.
  
 
 0.602
outE
General secretion pathway protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.567
hofB
Similar to Escherichia coli protein transport protein HofB or HopB or b0107 SWALL:HOFB_ECOLI (SWALL:P36645) (461 aa) fasta scores: E(): 3.2e-77, 51.06% id in 470 aa.
  
 
 0.567
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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