STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0547Conserved hypothetical protein; Similar to Salmonella typhi putative exported protein PilK or sty4553 SWALL:Q8Z1K9 (EMBL:AL627282) (155 aa) fasta scores: E(): 2.2e-21, 45.2% id in 146 aa. (163 aa)    
Predicted Functional Partners:
rci
Similar to Escherichia coli shufflon-specific DNA recombinase Rci SWALL:RCI1_ECOLI (SWALL:P10487) (384 aa) fasta scores: E(): 4.8e-91, 64.36% id in 376 aa; Belongs to the 'phage' integrase family.
       0.618
ECA0545A
Alternative C-terminus for the PilV protein (fragment); Similar to Escherichia coli shufflon protein c' SWALL:SHU6_ECOLI (SWALL:P09750) (433 aa) fasta scores: E(): 5e-10, 44.15% id in 77 aa, and to Escherichia coli PilV protein pilV SWALL:Q04905 (EMBL:X62169) (417 aa) fasta scores: E(): 5.7e-10, 43.42% id in 76 aa.
       0.456
traE
Putative plasmid transfer protein; Similar to Salmonella typhi hypothetical protein sty4554 or t4254 SWALL:Q8Z1K8 (EMBL:AL627282) (291 aa) fasta scores: E(): 1.3e-28, 36.89% id in 290 aa, and to Salmonella typhimurium TraE protein traE SWALL:Q9R2H6 (EMBL:AB027308) (274 aa) fasta scores: E(): 0.00014, 23.13% id in 268 aa.
       0.450
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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